GCA_000020425.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaEPIPPKNJ_1 (original name was: gnl|Prokka|EPIPPKNJ_1)

Region	Type	From	To
Region 1	RiPP-like	497,531	507,938
Region 2	lanthipeptide-class-iii,lassopeptide	529,071	560,303
Region 3	RiPP-like	1,918,352	1,928,747

gnlProkkaEPIPPKNJ_1 - Region 1 - RiPP-like

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Location: 497,531 - 507,938 nt. (total: 10,408 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaEPIPPKNJ_1 - Region 2 - lanthipeptide-class-iii,lassopeptide

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Location: 529,071 - 560,303 nt. (total: 31,233 nt) Show pHMM detection rules used

lanthipeptide-class-iii: (micKC and not PKS_KS)
lassopeptide: (PF13471 and Asn_synthase or micJ25 or mcjC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Lanthipeptides

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Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lasso peptide predictions

Lassopeptide(s) for ctg1_480

ctg1_480

Leader:

MKDYVPPAVEVIASFKEATN

Full core:

GVWFGNYVDVGGAKAPFPWGSN

Putative macrolactam:

GVWFGNYVD

MIBiG 3.1 matches for ctg1_480

11.8% BGC0000535 (ADJ56352.1): Lanthipeptide: nisin A

12

GAKAPFPWGSN

22

G K G N

10

GCKTGALMGCN

20

antiSMASH-DB 4.0 matches for ctg1_480

100.0% NZ_CP062951.1and 1 other:

NZ_CP071248.1 Lassopeptides: BLI009_RS05010_lassopeptide

Lassopeptides: BL1347_RS03935_lassopeptide

1

GVWFGNYVDVGGAKAPFPWGSN

22

GVWFGNYVDVGGAKAPFPWGSN

1

GVWFGNYVDVGGAKAPFPWGSN

22

86.4% NZ_CP006714.1: Lassopeptides: B2258_RS10665_lassopeptide

1

GVWFGNYVDVGGAKAPFPWGSN

22

G+WFG YVD+GGAKAPFPWGSN

1

GLWFGKYVDIGGAKAPFPWGSN

22

45.5% NZ_NGKY01000001.1: Lassopeptides: A5819_RS19010_lassopeptide

1

GVWFGNYVDVGGAKA

15

GVWFG + DV G KA

1

GVWFGRWKDVFGGKA

15

with 8 more sequence matches

40.9% NZ_JAMDLY010000010.1and 4 others:

NZ_JAPDMW010000034.1 Lassopeptides: OF778_RS29475_lassopeptideNZ_JMLT01000016.1 Lassopeptides: BP95_RS33025_lassopeptideNZ_LS992241.1 Lassopeptides: PBLR_RS07315_lassopeptideNZ_SADY01000011.1 Lassopeptides: C7Y44_RS26425_lassopeptide

Lassopeptides: M5X04_RS09885_lassopeptide

1

GVWFGNYVDVGGAKA

15

G+WFG Y DV G +A

1

GIWFGRYRDVLGGRA

15

36.4% NZ_CP053549.1and 3 others:

NZ_JADKSM010000003.1 Lassopeptides: ITJ61_RS18070_lassopeptideNZ_PSXX01000017.1 Lassopeptides: C5E05_RS18625_lassopeptideNZ_PSXZ01000003.1 Lassopeptides: C5E07_RS02640_lassopeptide

Lassopeptides: HMI60_RS00570_lassopeptide

1

GVWFGNYVDVGGAKA

15

GVWFG + D+ G +A

1

GVWFGRWRDIFGGRA

15

36.4% NZ_KI912489.1: Lassopeptides: allorf_513617_513742_lassopeptide

1

GVWFGNYVDVGGAKAPF

17

G+W+G + D+ GAK F

1

GLWYGKFRDIFGAKTYF

17

36.4% NZ_KI912489.1: Lassopeptides: allorf_513868_514041_lassopeptide

1

GVWFGNYVDVGGAKA

15

GVWFG + D+ G +A

1

GVWFGKWTDIFGGRA

15

34.8% NZ_AULE01000001.1: Lassopeptides: H509_RS27430_lassopeptide

1

GVWFGNYVDVGGAKAPFP

18

G+W G Y DV G +A

1

GLWTGKYTDVFGGRALIK

18

34.8% NZ_JADPFA010000001.1: Lassopeptides: I4U27_RS00440_lassopeptide

1

GVWFGNYVDVGGAKA

15

G+W GN+ DV G +A

1

GLWTGNFRDVFGGRA

15

34.8% NZ_NCVL01000001.1and 1 other:

NZ_VMMF01000036.1 Lassopeptides: HT717_RS09510_lassopeptide

Lassopeptides: B7694_RS10650_lassopeptide

1

GVWFGNYVDVGGAKAPFP

18

G+WFG + D+ G +A F

1

GLWFGKFTDIFGGRAVFQ

18

27.3% NZ_LMUL01000017.1: Lassopeptides: allorf_410478_410597_lassopeptide

5

GNYVDVGGAKAPFPWG

20

G++V+ K P P G

4

GDFVETALTKQPIPMG

19

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Lanthipeptides

Lasso peptides

Core peptide predictions

No core peptides found.

Core peptide predictions

ctg1_480 - Class II: Cleavage pHMM score: -3.90; RODEO score: 18; Monoisotopic mass: 2306.1 Da; Molecular weight: 2307.5 Da; Number of bridges: 0

gnlProkkaEPIPPKNJ_1 - Region 3 - RiPP-like

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Location: 1,918,352 - 1,928,747 nt. (total: 10,396 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.