GCA_000154385.1 - 6 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	acetate2butyrate	SCFA	296,260	322,502	Acetate to butyrate C. sporogenes	BUT	100%

c00002_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Others_HGD_unassigned	Putative	165,258	196,216

c00004_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Putrescine2spermidine	Aliphatic_amine	360	24,602	Arginine2putrescine R. gnavus	PUTR	100%

c00005_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_5)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Pyruvate2acetate-formate	SCFA	73,735	96,726	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 5.2	Rnf_complex	E-MGC	115,700	140,758	Rnf complex C. sporogenes	RNF	83%

c00022_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_22)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	TPP_AA_metabolism	Putative	205,345	234,016	Threonine to propionate E. coli	PROP	20%

No primary metabolite regions were found in these records:: c00003_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_3); c00006_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_6); c00007_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_7); c00008_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_8); c00009_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_9); c00010_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_10); c00011_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_11); c00012_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_12); c00013_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_13); c00014_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_14); c00015_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_15); c00016_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_16); c00017_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_17); c00018_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_18); c00019_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_19); c00020_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_20); c00021_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_21); c00023_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_23); c00024_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_24); c00025_gnlPro.. (original name was: gnl|Prokka|FPMJAHEA_25)

Compact view

c00001_gnlPro.. - Region 1 - acetate2butyrate

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Location: 296,260 - 322,502 nt. (total: 26,243 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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c00002_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 165,258 - 196,216 nt. (total: 30,959 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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core biosynthetic genes

additional biosynthetic genes

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regulatory genes

resistance genes

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No matches found.

c00004_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 360 - 24,602 nt. (total: 24,243 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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c00005_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 73,735 - 96,726 nt. (total: 22,992 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00005_gnlPro.. - Region 2 - Rnf_complex

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Location: 115,700 - 140,758 nt. (total: 25,059 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00022_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 205,345 - 234,016 nt. (total: 28,672 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

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