GCA_000179375.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaHNJEMNMP_53 (original name was: gnl|Prokka|HNJEMNMP_53)

Region	Type	From	To	Most similar known cluster		Similarity
Region 39.1	lanthipeptide-class-iv	1	14,869

gnlProkkaHNJEMNMP_68 (original name was: gnl|Prokka|HNJEMNMP_68)

Region	Type	From	To	Most similar known cluster		Similarity
Region 52.1	lanthipeptide-class-iii	726	18,223

gnlProkkaHNJEMNMP_121 (original name was: gnl|Prokka|HNJEMNMP_121)

Region	Type	From	To	Most similar known cluster		Similarity
Region 98.1	RiPP-like	1	5,709

Region	Type	From	To	Similarity
Region 39.1	lanthipeptide-class-iv	1	14,869
Region 52.1	lanthipeptide-class-iii	726	18,223
Region 98.1	RiPP-like	1	5,709

No secondary metabolite regions were found in these records:: gnlProkkaHNJEMNMP_2 (original name was: gnl|Prokka|HNJEMNMP_2); gnlProkkaHNJEMNMP_3 (original name was: gnl|Prokka|HNJEMNMP_3); gnlProkkaHNJEMNMP_4 (original name was: gnl|Prokka|HNJEMNMP_4); gnlProkkaHNJEMNMP_5 (original name was: gnl|Prokka|HNJEMNMP_5); gnlProkkaHNJEMNMP_6 (original name was: gnl|Prokka|HNJEMNMP_6); gnlProkkaHNJEMNMP_7 (original name was: gnl|Prokka|HNJEMNMP_7); gnlProkkaHNJEMNMP_10 (original name was: gnl|Prokka|HNJEMNMP_10); gnlProkkaHNJEMNMP_11 (original name was: gnl|Prokka|HNJEMNMP_11); gnlProkkaHNJEMNMP_13 (original name was: gnl|Prokka|HNJEMNMP_13); gnlProkkaHNJEMNMP_14 (original name was: gnl|Prokka|HNJEMNMP_14); gnlProkkaHNJEMNMP_15 (original name was: gnl|Prokka|HNJEMNMP_15); gnlProkkaHNJEMNMP_16 (original name was: gnl|Prokka|HNJEMNMP_16); gnlProkkaHNJEMNMP_17 (original name was: gnl|Prokka|HNJEMNMP_17); gnlProkkaHNJEMNMP_18 (original name was: gnl|Prokka|HNJEMNMP_18); gnlProkkaHNJEMNMP_19 (original name was: gnl|Prokka|HNJEMNMP_19); gnlProkkaHNJEMNMP_20 (original name was: gnl|Prokka|HNJEMNMP_20); gnlProkkaHNJEMNMP_21 (original name was: gnl|Prokka|HNJEMNMP_21); gnlProkkaHNJEMNMP_22 (original name was: gnl|Prokka|HNJEMNMP_22); gnlProkkaHNJEMNMP_23 (original name was: gnl|Prokka|HNJEMNMP_23); gnlProkkaHNJEMNMP_24 (original name was: gnl|Prokka|HNJEMNMP_24); gnlProkkaHNJEMNMP_26 (original name was: gnl|Prokka|HNJEMNMP_26); gnlProkkaHNJEMNMP_27 (original name was: gnl|Prokka|HNJEMNMP_27); gnlProkkaHNJEMNMP_29 (original name was: gnl|Prokka|HNJEMNMP_29); gnlProkkaHNJEMNMP_35 (original name was: gnl|Prokka|HNJEMNMP_35); gnlProkkaHNJEMNMP_36 (original name was: gnl|Prokka|HNJEMNMP_36); gnlProkkaHNJEMNMP_37 (original name was: gnl|Prokka|HNJEMNMP_37); gnlProkkaHNJEMNMP_38 (original name was: gnl|Prokka|HNJEMNMP_38); gnlProkkaHNJEMNMP_39 (original name was: gnl|Prokka|HNJEMNMP_39); gnlProkkaHNJEMNMP_40 (original name was: gnl|Prokka|HNJEMNMP_40); gnlProkkaHNJEMNMP_41 (original name was: gnl|Prokka|HNJEMNMP_41); gnlProkkaHNJEMNMP_42 (original name was: gnl|Prokka|HNJEMNMP_42); gnlProkkaHNJEMNMP_45 (original name was: gnl|Prokka|HNJEMNMP_45); gnlProkkaHNJEMNMP_47 (original name was: gnl|Prokka|HNJEMNMP_47); gnlProkkaHNJEMNMP_48 (original name was: gnl|Prokka|HNJEMNMP_48); gnlProkkaHNJEMNMP_49 (original name was: gnl|Prokka|HNJEMNMP_49); gnlProkkaHNJEMNMP_50 (original name was: gnl|Prokka|HNJEMNMP_50); gnlProkkaHNJEMNMP_51 (original name was: gnl|Prokka|HNJEMNMP_51); gnlProkkaHNJEMNMP_52 (original name was: gnl|Prokka|HNJEMNMP_52); gnlProkkaHNJEMNMP_54 (original name was: gnl|Prokka|HNJEMNMP_54); gnlProkkaHNJEMNMP_55 (original name was: gnl|Prokka|HNJEMNMP_55); gnlProkkaHNJEMNMP_56 (original name was: gnl|Prokka|HNJEMNMP_56); gnlProkkaHNJEMNMP_58 (original name was: gnl|Prokka|HNJEMNMP_58); gnlProkkaHNJEMNMP_60 (original name was: gnl|Prokka|HNJEMNMP_60); gnlProkkaHNJEMNMP_61 (original name was: gnl|Prokka|HNJEMNMP_61); gnlProkkaHNJEMNMP_62 (original name was: gnl|Prokka|HNJEMNMP_62); gnlProkkaHNJEMNMP_63 (original name was: gnl|Prokka|HNJEMNMP_63); gnlProkkaHNJEMNMP_64 (original name was: gnl|Prokka|HNJEMNMP_64); gnlProkkaHNJEMNMP_65 (original name was: gnl|Prokka|HNJEMNMP_65); gnlProkkaHNJEMNMP_66 (original name was: gnl|Prokka|HNJEMNMP_66); gnlProkkaHNJEMNMP_67 (original name was: gnl|Prokka|HNJEMNMP_67); gnlProkkaHNJEMNMP_69 (original name was: gnl|Prokka|HNJEMNMP_69); gnlProkkaHNJEMNMP_70 (original name was: gnl|Prokka|HNJEMNMP_70); gnlProkkaHNJEMNMP_71 (original name was: gnl|Prokka|HNJEMNMP_71); gnlProkkaHNJEMNMP_72 (original name was: gnl|Prokka|HNJEMNMP_72); gnlProkkaHNJEMNMP_73 (original name was: gnl|Prokka|HNJEMNMP_73); gnlProkkaHNJEMNMP_74 (original name was: gnl|Prokka|HNJEMNMP_74); gnlProkkaHNJEMNMP_75 (original name was: gnl|Prokka|HNJEMNMP_75); gnlProkkaHNJEMNMP_76 (original name was: gnl|Prokka|HNJEMNMP_76); gnlProkkaHNJEMNMP_77 (original name was: gnl|Prokka|HNJEMNMP_77); gnlProkkaHNJEMNMP_78 (original name was: gnl|Prokka|HNJEMNMP_78); gnlProkkaHNJEMNMP_79 (original name was: gnl|Prokka|HNJEMNMP_79); gnlProkkaHNJEMNMP_80 (original name was: gnl|Prokka|HNJEMNMP_80); gnlProkkaHNJEMNMP_81 (original name was: gnl|Prokka|HNJEMNMP_81); gnlProkkaHNJEMNMP_83 (original name was: gnl|Prokka|HNJEMNMP_83); gnlProkkaHNJEMNMP_84 (original name was: gnl|Prokka|HNJEMNMP_84); gnlProkkaHNJEMNMP_85 (original name was: gnl|Prokka|HNJEMNMP_85); gnlProkkaHNJEMNMP_86 (original name was: gnl|Prokka|HNJEMNMP_86); gnlProkkaHNJEMNMP_88 (original name was: gnl|Prokka|HNJEMNMP_88); gnlProkkaHNJEMNMP_89 (original name was: gnl|Prokka|HNJEMNMP_89); gnlProkkaHNJEMNMP_90 (original name was: gnl|Prokka|HNJEMNMP_90); gnlProkkaHNJEMNMP_91 (original name was: gnl|Prokka|HNJEMNMP_91); gnlProkkaHNJEMNMP_92 (original name was: gnl|Prokka|HNJEMNMP_92); gnlProkkaHNJEMNMP_93 (original name was: gnl|Prokka|HNJEMNMP_93); gnlProkkaHNJEMNMP_94 (original name was: gnl|Prokka|HNJEMNMP_94); gnlProkkaHNJEMNMP_95 (original name was: gnl|Prokka|HNJEMNMP_95); gnlProkkaHNJEMNMP_96 (original name was: gnl|Prokka|HNJEMNMP_96); gnlProkkaHNJEMNMP_97 (original name was: gnl|Prokka|HNJEMNMP_97); gnlProkkaHNJEMNMP_98 (original name was: gnl|Prokka|HNJEMNMP_98); gnlProkkaHNJEMNMP_99 (original name was: gnl|Prokka|HNJEMNMP_99); gnlProkkaHNJEMNMP_100 (original name was: gnl|Prokka|HNJEMNMP_100); gnlProkkaHNJEMNMP_101 (original name was: gnl|Prokka|HNJEMNMP_101); gnlProkkaHNJEMNMP_102 (original name was: gnl|Prokka|HNJEMNMP_102); gnlProkkaHNJEMNMP_103 (original name was: gnl|Prokka|HNJEMNMP_103); gnlProkkaHNJEMNMP_104 (original name was: gnl|Prokka|HNJEMNMP_104); gnlProkkaHNJEMNMP_105 (original name was: gnl|Prokka|HNJEMNMP_105); gnlProkkaHNJEMNMP_106 (original name was: gnl|Prokka|HNJEMNMP_106); gnlProkkaHNJEMNMP_108 (original name was: gnl|Prokka|HNJEMNMP_108); gnlProkkaHNJEMNMP_109 (original name was: gnl|Prokka|HNJEMNMP_109); gnlProkkaHNJEMNMP_111 (original name was: gnl|Prokka|HNJEMNMP_111); gnlProkkaHNJEMNMP_112 (original name was: gnl|Prokka|HNJEMNMP_112); gnlProkkaHNJEMNMP_113 (original name was: gnl|Prokka|HNJEMNMP_113); gnlProkkaHNJEMNMP_115 (original name was: gnl|Prokka|HNJEMNMP_115); gnlProkkaHNJEMNMP_116 (original name was: gnl|Prokka|HNJEMNMP_116); gnlProkkaHNJEMNMP_117 (original name was: gnl|Prokka|HNJEMNMP_117); gnlProkkaHNJEMNMP_119 (original name was: gnl|Prokka|HNJEMNMP_119); gnlProkkaHNJEMNMP_122 (original name was: gnl|Prokka|HNJEMNMP_122); gnlProkkaHNJEMNMP_123 (original name was: gnl|Prokka|HNJEMNMP_123); gnlProkkaHNJEMNMP_124 (original name was: gnl|Prokka|HNJEMNMP_124); gnlProkkaHNJEMNMP_125 (original name was: gnl|Prokka|HNJEMNMP_125); gnlProkkaHNJEMNMP_126 (original name was: gnl|Prokka|HNJEMNMP_126); gnlProkkaHNJEMNMP_127 (original name was: gnl|Prokka|HNJEMNMP_127); gnlProkkaHNJEMNMP_128 (original name was: gnl|Prokka|HNJEMNMP_128); gnlProkkaHNJEMNMP_130 (original name was: gnl|Prokka|HNJEMNMP_130); gnlProkkaHNJEMNMP_131 (original name was: gnl|Prokka|HNJEMNMP_131); gnlProkkaHNJEMNMP_132 (original name was: gnl|Prokka|HNJEMNMP_132); gnlProkkaHNJEMNMP_133 (original name was: gnl|Prokka|HNJEMNMP_133); gnlProkkaHNJEMNMP_134 (original name was: gnl|Prokka|HNJEMNMP_134); gnlProkkaHNJEMNMP_135 (original name was: gnl|Prokka|HNJEMNMP_135); gnlProkkaHNJEMNMP_136 (original name was: gnl|Prokka|HNJEMNMP_136); gnlProkkaHNJEMNMP_137 (original name was: gnl|Prokka|HNJEMNMP_137); gnlProkkaHNJEMNMP_138 (original name was: gnl|Prokka|HNJEMNMP_138); gnlProkkaHNJEMNMP_139 (original name was: gnl|Prokka|HNJEMNMP_139); gnlProkkaHNJEMNMP_140 (original name was: gnl|Prokka|HNJEMNMP_140)

Compact view

gnlProkkaHNJEMNMP_53 - Region 1 - lanthipeptide-class-iv

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Location: 1 - 14,869 nt. (total: 14,869 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptide(s) for ctg39_5

ctg39_7

Leader:

MSSVTYLDELDLLVPAEESQEELAG

Core:

SFVCRTFICKM

Core with dehydrations:

DhaFVCysRDhbFICysKM

antiSMASH-DB 4.0 matches for ctg39_7

100.0% NZ_CP022988.1and 1 other:

NZ_SDJT01000039.1 Lanthipeptides: allorf_05831_05941_lanthipeptide

Lanthipeptides: allorf_2047403_2047513_lanthipeptide

1

SFVCRTFICKM

11

SFVCRTFICKM

1

SFVCRTFICKM

11

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Lanthipeptides

Core peptide predictions

ctg39_7 - Class III: Cleavage pHMM score: -2.70; RODEO score: 0; Monoisotopic mass: 1297.6 Da; Molecular weight: 1298.6 Da; Number of bridges: 2

gnlProkkaHNJEMNMP_68 - Region 1 - lanthipeptide-class-iii

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Location: 726 - 18,223 nt. (total: 17,498 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iii: (micKC and not PKS_KS)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptide(s) for ctg52_15

ctg52_18

Leader:

MIDDHLPVAVSCRQEKKKQEEFVNMQVLDLQQLGNAGGAGLE

Core:

DSKSFSLICIGSRVGDGNHSSHKKHHKGKKH

Core with dehydrations:

DDhaKDhaFDhaLICysIGDhaRVGDGNHDhaDhaHKKHHKGKKH

antiSMASH-DB 4.0 matches for ctg52_18

100.0% NZ_CP022988.1and 2 others:

NZ_CP046131.1 Lanthipeptides: allorf_0022859_0023008_lanthipeptideNZ_KE145374.1 Lanthipeptides: allorf_617582_617731_lanthipeptide

Lanthipeptides: allorf_2143277_2143426_lanthipeptide

1

DSKSFSLICIGSRVGDGNHSSHKKHHKGKKH

31

DSKSFSLICIGSRVGDGNHSSHKKHHKGKKH

1

DSKSFSLICIGSRVGDGNHSSHKKHHKGKKH

31

48.4% NZ_SDJT01000024.1: Lanthipeptides: EST31_RS10455_lanthipeptide

2

SKSFSLICIGSRVGDGNHSS

21

SKS S ICIG GDGNHSS

1

SKSVSFICIGKITGDGNHSS

20

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Lanthipeptides

Core peptide predictions

ctg52_18 - Class III

Cleavage pHMM score: -2.40

RODEO score: 0

Monoisotopic mass: 3302.7 Da

Molecular weight: 3304.7 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 3322.7 Da N = 1; 3340.7 Da N = 2; 3358.7 Da N = 3; 3376.8 Da N = 4; 3394.8 Da N = 5

gnlProkkaHNJEMNMP_121 - Region 1 - RiPP-like

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Location: 1 - 5,709 nt. (total: 5,709 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.