GCA_000179375.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaHNJEMNMP_53 (original name was: gnl|Prokka|HNJEMNMP_53)

Region	Type	From	To	Most similar known cluster		Similarity
Region 39.1	lanthipeptide-class-iv	1	14,869

gnlProkkaHNJEMNMP_68 (original name was: gnl|Prokka|HNJEMNMP_68)

Region	Type	From	To	Most similar known cluster		Similarity
Region 52.1	lanthipeptide-class-iii	726	18,223

gnlProkkaHNJEMNMP_121 (original name was: gnl|Prokka|HNJEMNMP_121)

Region	Type	From	To	Most similar known cluster		Similarity
Region 98.1	RiPP-like	1	5,709

Region	Type	From	To	Similarity
Region 39.1	lanthipeptide-class-iv	1	14,869
Region 52.1	lanthipeptide-class-iii	726	18,223
Region 98.1	RiPP-like	1	5,709

Compact view

gnlProkkaHNJEMNMP_53 - Region 1 - lanthipeptide-class-iv

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Location: 1 - 14,869 nt. (total: 14,869 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptide(s) for ctg39_5

ctg39_7

Leader:

MSSVTYLDELDLLVPAEESQEELAG

Core:

SFVCRTFICKM

Core with dehydrations:

DhaFVCysRDhbFICysKM

antiSMASH-DB 4.0 matches for ctg39_7

100.0% NZ_CP022988.1and 1 other:

NZ_SDJT01000039.1 Lanthipeptides: allorf_05831_05941_lanthipeptide

Lanthipeptides: allorf_2047403_2047513_lanthipeptide

1

SFVCRTFICKM

11

SFVCRTFICKM

1

SFVCRTFICKM

11

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Lanthipeptides

Core peptide predictions

ctg39_7 - Class III: Cleavage pHMM score: -2.70; RODEO score: 0; Monoisotopic mass: 1297.6 Da; Molecular weight: 1298.6 Da; Number of bridges: 2

gnlProkkaHNJEMNMP_68 - Region 1 - lanthipeptide-class-iii

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Location: 726 - 18,223 nt. (total: 17,498 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iii: (micKC and not PKS_KS)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptide(s) for ctg52_15

ctg52_18

Leader:

MIDDHLPVAVSCRQEKKKQEEFVNMQVLDLQQLGNAGGAGLE

Core:

DSKSFSLICIGSRVGDGNHSSHKKHHKGKKH

Core with dehydrations:

DDhaKDhaFDhaLICysIGDhaRVGDGNHDhaDhaHKKHHKGKKH

antiSMASH-DB 4.0 matches for ctg52_18

100.0% NZ_CP022988.1and 2 others:

NZ_CP046131.1 Lanthipeptides: allorf_0022859_0023008_lanthipeptideNZ_KE145374.1 Lanthipeptides: allorf_617582_617731_lanthipeptide

Lanthipeptides: allorf_2143277_2143426_lanthipeptide

1

DSKSFSLICIGSRVGDGNHSSHKKHHKGKKH

31

DSKSFSLICIGSRVGDGNHSSHKKHHKGKKH

1

DSKSFSLICIGSRVGDGNHSSHKKHHKGKKH

31

48.4% NZ_SDJT01000024.1: Lanthipeptides: EST31_RS10455_lanthipeptide

2

SKSFSLICIGSRVGDGNHSS

21

SKS S ICIG GDGNHSS

1

SKSVSFICIGKITGDGNHSS

20

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Lanthipeptides

Core peptide predictions

ctg52_18 - Class III

Cleavage pHMM score: -2.40

RODEO score: 0

Monoisotopic mass: 3302.7 Da

Molecular weight: 3304.7 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 3322.7 Da N = 1; 3340.7 Da N = 2; 3358.7 Da N = 3; 3376.8 Da N = 4; 3394.8 Da N = 5

gnlProkkaHNJEMNMP_121 - Region 1 - RiPP-like

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Location: 1 - 5,709 nt. (total: 5,709 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.