GCA_000273035.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaIOLENEFD_1 (original name was: gnl|Prokka|IOLENEFD_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RRE-containing	226,980	247,767

gnlProkkaIOLENEFD_2 (original name was: gnl|Prokka|IOLENEFD_2)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	RRE-containing	868,177	888,461

gnlProkkaIOLENEFD_3 (original name was: gnl|Prokka|IOLENEFD_3)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	RiPP-like	552,185	564,356
Region 3.2	arylpolyene	733,890	781,401	flexirubin	Other	48%

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	RRE-containing	226,980	247,767
Region 2.1	RRE-containing	868,177	888,461
Region 3.1	RiPP-like	552,185	564,356
Region 3.2	arylpolyene	733,890	781,401	flexirubin	Other	48%

No secondary metabolite regions were found in these records:: gnlProkkaIOLENEFD_4 (original name was: gnl|Prokka|IOLENEFD_4); gnlProkkaIOLENEFD_5 (original name was: gnl|Prokka|IOLENEFD_5); gnlProkkaIOLENEFD_6 (original name was: gnl|Prokka|IOLENEFD_6); gnlProkkaIOLENEFD_7 (original name was: gnl|Prokka|IOLENEFD_7); gnlProkkaIOLENEFD_8 (original name was: gnl|Prokka|IOLENEFD_8); gnlProkkaIOLENEFD_9 (original name was: gnl|Prokka|IOLENEFD_9); gnlProkkaIOLENEFD_10 (original name was: gnl|Prokka|IOLENEFD_10); gnlProkkaIOLENEFD_11 (original name was: gnl|Prokka|IOLENEFD_11); gnlProkkaIOLENEFD_12 (original name was: gnl|Prokka|IOLENEFD_12); gnlProkkaIOLENEFD_13 (original name was: gnl|Prokka|IOLENEFD_13); gnlProkkaIOLENEFD_14 (original name was: gnl|Prokka|IOLENEFD_14); gnlProkkaIOLENEFD_15 (original name was: gnl|Prokka|IOLENEFD_15); gnlProkkaIOLENEFD_16 (original name was: gnl|Prokka|IOLENEFD_16); gnlProkkaIOLENEFD_17 (original name was: gnl|Prokka|IOLENEFD_17); gnlProkkaIOLENEFD_18 (original name was: gnl|Prokka|IOLENEFD_18); gnlProkkaIOLENEFD_19 (original name was: gnl|Prokka|IOLENEFD_19); gnlProkkaIOLENEFD_20 (original name was: gnl|Prokka|IOLENEFD_20); gnlProkkaIOLENEFD_21 (original name was: gnl|Prokka|IOLENEFD_21); gnlProkkaIOLENEFD_22 (original name was: gnl|Prokka|IOLENEFD_22)

Compact view

gnlProkkaIOLENEFD_1 - Region 1 - RRE-containing

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Location: 226,980 - 247,767 nt. (total: 20,788 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaIOLENEFD_2 - Region 1 - RRE-containing

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Location: 868,177 - 888,461 nt. (total: 20,285 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaIOLENEFD_3 - Region 1 - RiPP-like

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Location: 552,185 - 564,356 nt. (total: 12,172 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaIOLENEFD_3 - Region 2 - arylpolyene

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Location: 733,890 - 781,401 nt. (total: 47,512 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

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Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg3_622

AMP-binding (56..293): X

nrpys: Asp, Asn, Glu, Gln, Aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: YMRMVITSSK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)