GCA_000273315.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaJADKLDDF_1 (original name was: gnl|Prokka|JADKLDDF_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	arylpolyene	130,148	177,930	flexirubin	Other	48%
Region 1.2	RRE-containing	616,143	636,517

No secondary metabolite regions were found in these records:: gnlProkkaJADKLDDF_2 (original name was: gnl|Prokka|JADKLDDF_2); gnlProkkaJADKLDDF_3 (original name was: gnl|Prokka|JADKLDDF_3); gnlProkkaJADKLDDF_4 (original name was: gnl|Prokka|JADKLDDF_4); gnlProkkaJADKLDDF_5 (original name was: gnl|Prokka|JADKLDDF_5); gnlProkkaJADKLDDF_6 (original name was: gnl|Prokka|JADKLDDF_6); gnlProkkaJADKLDDF_7 (original name was: gnl|Prokka|JADKLDDF_7); gnlProkkaJADKLDDF_8 (original name was: gnl|Prokka|JADKLDDF_8); gnlProkkaJADKLDDF_9 (original name was: gnl|Prokka|JADKLDDF_9); gnlProkkaJADKLDDF_10 (original name was: gnl|Prokka|JADKLDDF_10); gnlProkkaJADKLDDF_11 (original name was: gnl|Prokka|JADKLDDF_11); gnlProkkaJADKLDDF_12 (original name was: gnl|Prokka|JADKLDDF_12); gnlProkkaJADKLDDF_13 (original name was: gnl|Prokka|JADKLDDF_13)

Compact view

gnlProkkaJADKLDDF_1 - Region 1 - arylpolyene

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Location: 130,148 - 177,930 nt. (total: 47,783 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg1_111

AMP-binding (50..290): X

nrpys: Asp, Asn, Glu, Gln, Aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: YMRMIITSSK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)

gnlProkkaJADKLDDF_1 - Region 2 - RRE-containing

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Location: 616,143 - 636,517 nt. (total: 20,375 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.