GCA_000434095.1 - 9 region(s)

Identified primary metabolite regions

c00008_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_8)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Rnf_complex	E-MGC	1,504	26,604	Rnf complex C. sporogenes	RNF	83%

c00011_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_11)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	Fumarate2succinate	SCFA	10,160	28,431	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00042_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_44)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 42.1	NADH_dehydrogenase_I	E-MGC	34,255	64,219	NADH dehydrogenase I Bacteroides sp.	NADHD	100%

c00065_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_68)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 65.1	Pyruvate2acetate-formate	SCFA	1	13,209	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%
Region 65.2	TPP_fatty_acids	Putative	15,900	41,775

c00067_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_70)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 67.1	porA	SCFA	77,384	100,308	porA C. sporogenes	POR	80%

c00075_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_78)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 75.1	PFOR_II_pathway	SCFA	4,385	27,939	PFOR II pathway B. thetaiotaomicron	PFORII	100%
Region 75.2	succinate2propionate	SCFA	67,124	91,762	Succinate to propionate B. theta	PRO	66%

c00104_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_112)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 104.1	TPP_AA_metabolism	Putative	75,638	102,239

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_1); c00002_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_2); c00003_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_3); c00004_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_4); c00005_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_5); c00006_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_6); c00007_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_7); c00009_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_9); c00010_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_10); c00012_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_13); c00013_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_14); c00014_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_15); c00015_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_16); c00016_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_17); c00017_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_18); c00018_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_19); c00019_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_20); c00020_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_21); c00021_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_22); c00022_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_23); c00023_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_24); c00024_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_25); c00025_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_26); c00026_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_27); c00027_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_28); c00028_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_29); c00029_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_30); c00030_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_31); c00031_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_32); c00032_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_33); c00033_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_34); c00034_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_36); c00035_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_37); c00036_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_38); c00037_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_39); c00038_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_40); c00039_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_41); c00040_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_42); c00041_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_43); c00043_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_45); c00044_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_46); c00045_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_47); c00046_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_48); c00047_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_49); c00048_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_50); c00049_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_51); c00050_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_52); c00051_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_53); c00052_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_55); c00053_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_56); c00054_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_57); c00055_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_58); c00056_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_59); c00057_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_60); c00058_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_61); c00059_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_62); c00060_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_63); c00061_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_64); c00062_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_65); c00063_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_66); c00064_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_67); c00066_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_69); c00068_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_71); c00069_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_72); c00070_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_73); c00071_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_74); c00072_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_75); c00073_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_76); c00074_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_77); c00076_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_80); c00077_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_81); c00078_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_82); c00079_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_84); c00080_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_85); c00081_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_86); c00082_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_87); c00083_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_88); c00084_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_89); c00085_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_91); c00086_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_92); c00087_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_94); c00088_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_95); c00089_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_96); c00090_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_97); c00091_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_98); c00092_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_99); c00093_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_100); c00094_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_101); c00095_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_102); c00096_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_103); c00097_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_104); c00098_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_105); c00099_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_106); c00100_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_108); c00101_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_109); c00102_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_110); c00103_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_111); c00105_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_113); c00106_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_114); c00107_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_115); c00108_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_116); c00109_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_117); c00110_gnlPro.. (original name was: gnl|Prokka|GCHDDLEI_118)

Compact view

c00008_gnlPro.. - Region 1 - Rnf_complex

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Location: 1,504 - 26,604 nt. (total: 25,101 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00011_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 10,160 - 28,431 nt. (total: 18,272 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

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transport-related genes

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c00042_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 34,255 - 64,219 nt. (total: 29,965 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00065_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 13,209 nt. (total: 13,209 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00065_gnlPro.. - Region 2 - TPP_fatty_acids

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Location: 15,900 - 41,775 nt. (total: 25,876 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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core biosynthetic genes

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resistance genes

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c00067_gnlPro.. - Region 1 - porA

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Location: 77,384 - 100,308 nt. (total: 22,925 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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core biosynthetic genes

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resistance genes

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c00075_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 4,385 - 27,939 nt. (total: 23,555 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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core biosynthetic genes

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c00075_gnlPro.. - Region 2 - succinate2propionate

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Location: 67,124 - 91,762 nt. (total: 24,639 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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electron transport genes

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c00104_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 75,638 - 102,239 nt. (total: 26,602 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

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resistance genes

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