GCA_000435135.1 - 5 region(s)

Identified primary metabolite regions

c00009_gnlPro.. (original name was: gnl|Prokka|NOKLINPP_9)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	porA	SCFA	6,491	29,960

c00049_gnlPro.. (original name was: gnl|Prokka|NOKLINPP_52)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 49.1	acetate2butyrate	SCFA	6,576	23,248	Acetate to butyrate C. sporogenes	BUT	83%

c00053_gnlPro.. (original name was: gnl|Prokka|NOKLINPP_56)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 53.1	Pyruvate2acetate-formate	SCFA	4,604	27,598	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00073_gnlPro.. (original name was: gnl|Prokka|NOKLINPP_78)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 73.1	Putrescine2spermidine	Aliphatic_amine	34,373	57,814	Putrescine2spermidine E. rectale	SPRM	100%

c00085_gnlPro.. (original name was: gnl|Prokka|NOKLINPP_90)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 85.1	Rnf_complex,succinate2propionate	SCFA	138,962	183,453	Rnf complex C. sporogenes	RNF	100%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 9.1	porA	SCFA	6,491	29,960
Region 49.1	acetate2butyrate	SCFA	6,576	23,248	Acetate to butyrate C. sporogenes	BUT	83%
Region 53.1	Pyruvate2acetate-formate	SCFA	4,604	27,598	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 73.1	Putrescine2spermidine	Aliphatic_amine	34,373	57,814	Putrescine2spermidine E. rectale	SPRM	100%
Region 85.1	Rnf_complex,succinate2propionate	SCFA	138,962	183,453	Rnf complex C. sporogenes	RNF	100%

Compact view

c00009_gnlPro.. - Region 1 - porA

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Location: 6,491 - 29,960 nt. (total: 23,470 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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No matches found.

c00049_gnlPro.. - Region 1 - acetate2butyrate

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Location: 6,576 - 23,248 nt. (total: 16,673 nt) Show pHMM detection rules used

Region on contig edge.

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

Legend:

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c00053_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 4,604 - 27,598 nt. (total: 22,995 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

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resistance genes

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c00073_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 34,373 - 57,814 nt. (total: 23,442 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

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regulatory genes

resistance genes

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c00085_gnlPro.. - Region 1 - Rnf_complex,succinate2propionate

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Location: 138,962 - 183,453 nt. (total: 44,492 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters