GCA_000507045.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaEEIIEKBK_2 (original name was: gnl|Prokka|EEIIEKBK_2)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	cyclic-lactone-autoinducer	1	12,759

gnlProkkaEEIIEKBK_5 (original name was: gnl|Prokka|EEIIEKBK_5)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	RiPP-like	65,731	77,881	salivaricin CRL1328 α peptide/salivaricin CRL1328 β peptide	RiPP	16%

gnlProkkaEEIIEKBK_6 (original name was: gnl|Prokka|EEIIEKBK_6)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	terpene	83,372	104,253

gnlProkkaEEIIEKBK_62 (original name was: gnl|Prokka|EEIIEKBK_62)

Region	Type	From	To	Most similar known cluster		Similarity
Region 58.1	NRPS	1	11,489	mutanocyclin/leuvalin/tyrvalin	NRP	30%

gnlProkkaEEIIEKBK_64 (original name was: gnl|Prokka|EEIIEKBK_64)

Region	Type	From	To	Most similar known cluster		Similarity
Region 60.1	T3PKS	1	25,642

Region	Type	From	To	Most similar known cluster	Similarity
Region 2.1	cyclic-lactone-autoinducer	1	12,759
Region 5.1	RiPP-like	65,731	77,881	salivaricin CRL1328 α peptide/salivaricin CRL1328 β peptide	RiPP	16%
Region 6.1	terpene	83,372	104,253
Region 58.1	NRPS	1	11,489	mutanocyclin/leuvalin/tyrvalin	NRP	30%
Region 60.1	T3PKS	1	25,642

Compact view

gnlProkkaEEIIEKBK_2 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 12,759 nt. (total: 12,759 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaEEIIEKBK_5 - Region 1 - RiPP-like

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Location: 65,731 - 77,881 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaEEIIEKBK_6 - Region 1 - terpene

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Location: 83,372 - 104,253 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

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resistance

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KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaEEIIEKBK_62 - Region 1 - NRPS

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Location: 1 - 11,489 nt. (total: 11,489 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

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resistance

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NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 11489:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg58_5

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AMP-binding (447..839): Thr

nrpys: Thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: thr (Thr)
Single AA prediction:: thr (Thr)

Stachelhaus prediction details:

Stachelhaus sequence:: DYFTLGLVVK
Nearest Stachelhaus code(s):: Leu DYFTFGLIIK (68% 8Å match); OMe-Trp DAFTLGCVFK (56% 8Å match)
Stachelhaus code match:: 70% (weak)

gnlProkkaEEIIEKBK_64 - Region 1 - T3PKS

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Location: 1 - 25,642 nt. (total: 25,642 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.