GCA_000598485.1 - 11 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|MGLCGANE_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Fumarate2succinate	SCFA	11,427	34,885	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00021_gnlPro.. (original name was: gnl|Prokka|MGLCGANE_23)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	NADH_dehydrogenase_I	E-MGC	51,976	81,912	NADH dehydrogenase I Bacteroides sp.	NADHD	100%

c00043_gnlPro.. (original name was: gnl|Prokka|MGLCGANE_45)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 43.1	TPP_fatty_acids	Putative	1	21,965

c00044_gnlPro.. (original name was: gnl|Prokka|MGLCGANE_46)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	Pyruvate2acetate-formate	SCFA	5,713	18,711	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00060_gnlPro.. (original name was: gnl|Prokka|MGLCGANE_65)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 60.1	porA	SCFA	1	21,994	porA C. sporogenes	POR	80%

c00164_gnlPro.. (original name was: gnl|Prokka|MGLCGANE_193)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 164.1	Rnf_complex	E-MGC	1	7,046	Rnf complex C. sporogenes	RNF	83%

c00196_gnlPro.. (original name was: gnl|Prokka|MGLCGANE_232)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 196.1	succinate2propionate	SCFA	88,039	112,734	Succinate to propionate B. theta	PRO	66%

c00198_gnlPro.. (original name was: gnl|Prokka|MGLCGANE_234)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 198.1	PFOR_II_pathway	SCFA	1	22,112	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00219_gnlPro.. (original name was: gnl|Prokka|MGLCGANE_259)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 219.1	TPP_AA_metabolism	Putative	43,419	70,019

c00246_gnlPro.. (original name was: gnl|Prokka|MGLCGANE_290)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 246.1	Fumarate2succinate	SCFA	12,766	36,224	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00247_gnlPro.. (original name was: gnl|Prokka|MGLCGANE_291)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 247.1	Fumarate2succinate	SCFA	11,427	34,885	Fumarate to succinate B. thetaiotaomicron	SUC	100%

Compact view

c00001_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 11,427 - 34,885 nt. (total: 23,459 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00021_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 51,976 - 81,912 nt. (total: 29,937 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00043_gnlPro.. - Region 1 - TPP_fatty_acids

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Location: 1 - 21,965 nt. (total: 21,965 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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core biosynthetic genes

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regulatory genes

resistance genes

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No matches found.

c00044_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 5,713 - 18,711 nt. (total: 12,999 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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c00060_gnlPro.. - Region 1 - porA

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Location: 1 - 21,994 nt. (total: 21,994 nt) Show pHMM detection rules used

Region on contig edge.

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

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transport-related genes

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resistance genes

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c00164_gnlPro.. - Region 1 - Rnf_complex

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Location: 1 - 7,046 nt. (total: 7,046 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

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c00196_gnlPro.. - Region 1 - succinate2propionate

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Location: 88,039 - 112,734 nt. (total: 24,696 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00198_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 1 - 22,112 nt. (total: 22,112 nt) Show pHMM detection rules used

Region on contig edge.

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00219_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 43,419 - 70,019 nt. (total: 26,601 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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resistance genes

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c00246_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 12,766 - 36,224 nt. (total: 23,459 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00247_gnlPro.. - Region 1 - Fumarate2succinate

Download region GenBank file

Location: 11,427 - 34,885 nt. (total: 23,459 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters