GCA_000598505.1 - 9 region(s)

Identified primary metabolite regions

c00028_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_29)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 28.1	NADH_dehydrogenase_I	E-MGC	32,298	62,234	NADH dehydrogenase I Bacteroides sp.	NADHD	100%

c00041_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_47)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 41.1	TPP_fatty_acids	Putative	1	25,365
Region 41.2	Pyruvate2acetate-formate	SCFA	28,057	41,959	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00056_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_63)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 56.1	porA	SCFA	93,484	116,409	porA C. sporogenes	POR	80%

c00095_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_105)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 95.1	Rnf_complex	E-MGC	1	17,996	Rnf complex C. sporogenes	RNF	83%

c00110_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_120)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 110.1	succinate2propionate	SCFA	92,655	117,293	Succinate to propionate B. theta	PRO	66%
Region 110.2	PFOR_II_pathway	SCFA	155,504	179,058	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00120_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_131)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 120.1	TPP_AA_metabolism	Putative	10,197	36,797

c00151_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_165)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 151.1	Fumarate2succinate	SCFA	11,868	35,326	Fumarate to succinate B. thetaiotaomicron	SUC	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_1); c00002_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_2); c00003_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_3); c00004_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_4); c00005_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_5); c00006_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_6); c00007_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_7); c00008_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_8); c00009_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_9); c00010_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_11); c00011_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_12); c00012_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_13); c00013_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_14); c00014_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_15); c00015_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_16); c00016_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_17); c00017_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_18); c00018_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_19); c00019_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_20); c00020_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_21); c00021_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_22); c00022_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_23); c00023_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_24); c00024_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_25); c00025_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_26); c00026_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_27); c00027_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_28); c00029_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_30); c00030_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_31); c00031_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_33); c00032_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_34); c00033_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_35); c00034_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_40); c00035_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_41); c00036_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_42); c00037_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_43); c00038_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_44); c00039_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_45); c00040_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_46); c00042_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_48); c00043_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_49); c00044_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_50); c00045_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_51); c00046_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_52); c00047_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_53); c00048_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_54); c00049_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_55); c00050_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_56); c00051_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_57); c00052_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_59); c00053_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_60); c00054_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_61); c00055_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_62); c00057_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_64); c00058_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_65); c00059_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_66); c00060_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_67); c00061_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_68); c00062_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_69); c00063_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_70); c00064_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_71); c00065_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_72); c00066_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_73); c00067_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_74); c00068_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_75); c00069_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_76); c00070_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_77); c00071_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_78); c00072_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_79); c00073_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_80); c00074_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_81); c00075_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_82); c00076_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_83); c00077_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_84); c00078_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_85); c00079_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_86); c00080_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_87); c00081_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_88); c00082_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_90); c00083_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_91); c00084_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_92); c00085_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_93); c00086_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_96); c00087_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_97); c00088_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_98); c00089_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_99); c00090_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_100); c00091_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_101); c00092_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_102); c00093_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_103); c00094_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_104); c00096_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_106); c00097_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_107); c00098_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_108); c00099_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_109); c00100_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_110); c00101_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_111); c00102_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_112); c00103_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_113); c00104_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_114); c00105_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_115); c00106_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_116); c00107_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_117); c00108_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_118); c00109_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_119); c00111_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_121); c00112_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_122); c00113_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_123); c00114_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_124); c00115_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_126); c00116_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_127); c00117_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_128); c00118_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_129); c00119_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_130); c00121_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_132); c00122_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_133); c00123_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_134); c00124_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_135); c00125_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_136); c00126_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_137); c00127_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_138); c00128_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_139); c00129_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_140); c00130_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_141); c00131_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_142); c00132_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_143); c00133_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_144); c00134_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_145); c00135_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_147); c00136_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_148); c00137_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_149); c00138_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_151); c00139_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_152); c00140_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_153); c00141_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_154); c00142_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_155); c00143_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_156); c00144_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_157); c00145_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_158); c00146_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_159); c00147_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_160); c00148_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_161); c00149_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_162); c00150_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_164); c00152_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_166); c00153_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_167); c00154_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_168); c00155_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_169); c00156_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_171); c00157_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_174); c00158_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_175); c00159_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_176); c00160_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_177); c00161_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_178); c00162_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_179); c00163_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_180); c00164_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_182); c00165_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_184); c00166_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_188); c00167_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_190); c00168_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_191); c00169_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_192); c00170_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_193); c00171_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_196); c00172_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_197); c00173_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_199); c00174_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_203); c00175_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_205); c00176_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_206); c00177_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_207); c00178_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_208); c00179_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_209); c00180_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_211); c00181_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_214); c00182_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_217); c00183_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_219); c00184_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_221); c00185_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_222); c00186_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_223); c00187_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_224); c00188_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_225); c00189_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_226); c00190_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_227); c00191_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_228); c00192_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_229); c00193_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_230); c00194_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_233); c00195_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_234); c00196_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_235); c00197_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_238); c00198_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_239); c00199_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_240); c00200_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_241); c00201_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_242); c00202_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_243); c00203_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_244); c00204_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_245); c00205_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_247); c00206_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_248); c00207_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_250); c00208_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_252); c00209_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_253); c00210_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_254); c00211_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_255); c00212_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_257); c00213_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_259); c00214_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_260); c00215_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_261); c00216_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_262); c00217_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_263); c00218_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_264); c00219_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_266); c00220_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_267); c00221_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_269); c00222_gnlPro.. (original name was: gnl|Prokka|MEDCLNLC_271)

Compact view

c00028_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 32,298 - 62,234 nt. (total: 29,937 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00041_gnlPro.. - Region 1 - TPP_fatty_acids

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Location: 1 - 25,365 nt. (total: 25,365 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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core biosynthetic genes

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No matches found.

c00041_gnlPro.. - Region 2 - Pyruvate2acetate-formate

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Location: 28,057 - 41,959 nt. (total: 13,903 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

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c00056_gnlPro.. - Region 1 - porA

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Location: 93,484 - 116,409 nt. (total: 22,926 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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core biosynthetic genes

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c00095_gnlPro.. - Region 1 - Rnf_complex

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Location: 1 - 17,996 nt. (total: 17,996 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

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c00110_gnlPro.. - Region 1 - succinate2propionate

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Location: 92,655 - 117,293 nt. (total: 24,639 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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core biosynthetic genes

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c00110_gnlPro.. - Region 2 - PFOR_II_pathway

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Location: 155,504 - 179,058 nt. (total: 23,555 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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core biosynthetic genes

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transport-related genes

regulatory genes

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c00120_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 10,197 - 36,797 nt. (total: 26,601 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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resistance genes

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No matches found.

c00151_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 11,868 - 35,326 nt. (total: 23,459 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

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