GCA_000598965.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaGMJFNDCD_7 (original name was: gnl|Prokka|GMJFNDCD_7)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	RRE-containing	153,143	173,496	polysaccharide C	Saccharide	28%

gnlProkkaGMJFNDCD_13 (original name was: gnl|Prokka|GMJFNDCD_13)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	NRPS-like	73,008	115,437

No secondary metabolite regions were found in these records:: gnlProkkaGMJFNDCD_1 (original name was: gnl|Prokka|GMJFNDCD_1); gnlProkkaGMJFNDCD_2 (original name was: gnl|Prokka|GMJFNDCD_2); gnlProkkaGMJFNDCD_3 (original name was: gnl|Prokka|GMJFNDCD_3); gnlProkkaGMJFNDCD_4 (original name was: gnl|Prokka|GMJFNDCD_4); gnlProkkaGMJFNDCD_5 (original name was: gnl|Prokka|GMJFNDCD_5); gnlProkkaGMJFNDCD_6 (original name was: gnl|Prokka|GMJFNDCD_6); gnlProkkaGMJFNDCD_8 (original name was: gnl|Prokka|GMJFNDCD_8); gnlProkkaGMJFNDCD_9 (original name was: gnl|Prokka|GMJFNDCD_9); gnlProkkaGMJFNDCD_10 (original name was: gnl|Prokka|GMJFNDCD_10); gnlProkkaGMJFNDCD_11 (original name was: gnl|Prokka|GMJFNDCD_11); gnlProkkaGMJFNDCD_14 (original name was: gnl|Prokka|GMJFNDCD_14); gnlProkkaGMJFNDCD_15 (original name was: gnl|Prokka|GMJFNDCD_15); gnlProkkaGMJFNDCD_16 (original name was: gnl|Prokka|GMJFNDCD_16); gnlProkkaGMJFNDCD_17 (original name was: gnl|Prokka|GMJFNDCD_17); gnlProkkaGMJFNDCD_18 (original name was: gnl|Prokka|GMJFNDCD_18); gnlProkkaGMJFNDCD_19 (original name was: gnl|Prokka|GMJFNDCD_19); gnlProkkaGMJFNDCD_21 (original name was: gnl|Prokka|GMJFNDCD_21); gnlProkkaGMJFNDCD_22 (original name was: gnl|Prokka|GMJFNDCD_22); gnlProkkaGMJFNDCD_23 (original name was: gnl|Prokka|GMJFNDCD_23); gnlProkkaGMJFNDCD_25 (original name was: gnl|Prokka|GMJFNDCD_25); gnlProkkaGMJFNDCD_26 (original name was: gnl|Prokka|GMJFNDCD_26); gnlProkkaGMJFNDCD_27 (original name was: gnl|Prokka|GMJFNDCD_27); gnlProkkaGMJFNDCD_28 (original name was: gnl|Prokka|GMJFNDCD_28); gnlProkkaGMJFNDCD_29 (original name was: gnl|Prokka|GMJFNDCD_29); gnlProkkaGMJFNDCD_32 (original name was: gnl|Prokka|GMJFNDCD_32); gnlProkkaGMJFNDCD_34 (original name was: gnl|Prokka|GMJFNDCD_34); gnlProkkaGMJFNDCD_35 (original name was: gnl|Prokka|GMJFNDCD_35); gnlProkkaGMJFNDCD_36 (original name was: gnl|Prokka|GMJFNDCD_36); gnlProkkaGMJFNDCD_37 (original name was: gnl|Prokka|GMJFNDCD_37); gnlProkkaGMJFNDCD_38 (original name was: gnl|Prokka|GMJFNDCD_38); gnlProkkaGMJFNDCD_39 (original name was: gnl|Prokka|GMJFNDCD_39); gnlProkkaGMJFNDCD_41 (original name was: gnl|Prokka|GMJFNDCD_41); gnlProkkaGMJFNDCD_43 (original name was: gnl|Prokka|GMJFNDCD_43)

Compact view

gnlProkkaGMJFNDCD_7 - Region 1 - RRE-containing

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Location: 153,143 - 173,496 nt. (total: 20,354 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaGMJFNDCD_13 - Region 1 - NRPS-like

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Location: 73,008 - 115,437 nt. (total: 42,430 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 73007 - 115437:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg12_93

AMP-binding (12..401): X

nrpys: Leu, Ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALFLGVVLK
Nearest Stachelhaus code(s):: Leu or Ile DAIYLGVVLK (59% 8Å match); aIle DALVFGVVLK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)