GCA_000599225.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaDAKACKIE_16 (original name was: gnl|Prokka|DAKACKIE_16)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	RRE-containing	148,717	166,563	polysaccharide C	Saccharide	16%

gnlProkkaDAKACKIE_21 (original name was: gnl|Prokka|DAKACKIE_21)

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	phosphonate	1	24,080	polysaccharide B	Saccharide	23%

gnlProkkaDAKACKIE_32 (original name was: gnl|Prokka|DAKACKIE_32)

Region	Type	From	To	Most similar known cluster		Similarity
Region 29.1	phosphonate	69,922	83,481	polysaccharide B	Saccharide	13%

gnlProkkaDAKACKIE_35 (original name was: gnl|Prokka|DAKACKIE_35)

Region	Type	From	To	Most similar known cluster		Similarity
Region 32.1	NRPS-like	22,025	64,454

No secondary metabolite regions were found in these records:: gnlProkkaDAKACKIE_1 (original name was: gnl|Prokka|DAKACKIE_1); gnlProkkaDAKACKIE_2 (original name was: gnl|Prokka|DAKACKIE_2); gnlProkkaDAKACKIE_3 (original name was: gnl|Prokka|DAKACKIE_3); gnlProkkaDAKACKIE_4 (original name was: gnl|Prokka|DAKACKIE_4); gnlProkkaDAKACKIE_6 (original name was: gnl|Prokka|DAKACKIE_6); gnlProkkaDAKACKIE_7 (original name was: gnl|Prokka|DAKACKIE_7); gnlProkkaDAKACKIE_9 (original name was: gnl|Prokka|DAKACKIE_9); gnlProkkaDAKACKIE_10 (original name was: gnl|Prokka|DAKACKIE_10); gnlProkkaDAKACKIE_11 (original name was: gnl|Prokka|DAKACKIE_11); gnlProkkaDAKACKIE_12 (original name was: gnl|Prokka|DAKACKIE_12); gnlProkkaDAKACKIE_13 (original name was: gnl|Prokka|DAKACKIE_13); gnlProkkaDAKACKIE_14 (original name was: gnl|Prokka|DAKACKIE_14); gnlProkkaDAKACKIE_15 (original name was: gnl|Prokka|DAKACKIE_15); gnlProkkaDAKACKIE_17 (original name was: gnl|Prokka|DAKACKIE_17); gnlProkkaDAKACKIE_18 (original name was: gnl|Prokka|DAKACKIE_18); gnlProkkaDAKACKIE_19 (original name was: gnl|Prokka|DAKACKIE_19); gnlProkkaDAKACKIE_20 (original name was: gnl|Prokka|DAKACKIE_20); gnlProkkaDAKACKIE_22 (original name was: gnl|Prokka|DAKACKIE_22); gnlProkkaDAKACKIE_23 (original name was: gnl|Prokka|DAKACKIE_23); gnlProkkaDAKACKIE_24 (original name was: gnl|Prokka|DAKACKIE_24); gnlProkkaDAKACKIE_25 (original name was: gnl|Prokka|DAKACKIE_25); gnlProkkaDAKACKIE_26 (original name was: gnl|Prokka|DAKACKIE_26); gnlProkkaDAKACKIE_27 (original name was: gnl|Prokka|DAKACKIE_27); gnlProkkaDAKACKIE_28 (original name was: gnl|Prokka|DAKACKIE_28); gnlProkkaDAKACKIE_30 (original name was: gnl|Prokka|DAKACKIE_30); gnlProkkaDAKACKIE_31 (original name was: gnl|Prokka|DAKACKIE_31); gnlProkkaDAKACKIE_33 (original name was: gnl|Prokka|DAKACKIE_33); gnlProkkaDAKACKIE_34 (original name was: gnl|Prokka|DAKACKIE_34); gnlProkkaDAKACKIE_36 (original name was: gnl|Prokka|DAKACKIE_36); gnlProkkaDAKACKIE_37 (original name was: gnl|Prokka|DAKACKIE_37); gnlProkkaDAKACKIE_38 (original name was: gnl|Prokka|DAKACKIE_38); gnlProkkaDAKACKIE_39 (original name was: gnl|Prokka|DAKACKIE_39); gnlProkkaDAKACKIE_40 (original name was: gnl|Prokka|DAKACKIE_40); gnlProkkaDAKACKIE_41 (original name was: gnl|Prokka|DAKACKIE_41); gnlProkkaDAKACKIE_42 (original name was: gnl|Prokka|DAKACKIE_42); gnlProkkaDAKACKIE_43 (original name was: gnl|Prokka|DAKACKIE_43); gnlProkkaDAKACKIE_44 (original name was: gnl|Prokka|DAKACKIE_44); gnlProkkaDAKACKIE_45 (original name was: gnl|Prokka|DAKACKIE_45); gnlProkkaDAKACKIE_46 (original name was: gnl|Prokka|DAKACKIE_46); gnlProkkaDAKACKIE_47 (original name was: gnl|Prokka|DAKACKIE_47); gnlProkkaDAKACKIE_48 (original name was: gnl|Prokka|DAKACKIE_48); gnlProkkaDAKACKIE_49 (original name was: gnl|Prokka|DAKACKIE_49); gnlProkkaDAKACKIE_51 (original name was: gnl|Prokka|DAKACKIE_51); gnlProkkaDAKACKIE_52 (original name was: gnl|Prokka|DAKACKIE_52); gnlProkkaDAKACKIE_53 (original name was: gnl|Prokka|DAKACKIE_53); gnlProkkaDAKACKIE_54 (original name was: gnl|Prokka|DAKACKIE_54); gnlProkkaDAKACKIE_55 (original name was: gnl|Prokka|DAKACKIE_55); gnlProkkaDAKACKIE_56 (original name was: gnl|Prokka|DAKACKIE_56); gnlProkkaDAKACKIE_57 (original name was: gnl|Prokka|DAKACKIE_57); gnlProkkaDAKACKIE_58 (original name was: gnl|Prokka|DAKACKIE_58); gnlProkkaDAKACKIE_60 (original name was: gnl|Prokka|DAKACKIE_60); gnlProkkaDAKACKIE_62 (original name was: gnl|Prokka|DAKACKIE_62); gnlProkkaDAKACKIE_63 (original name was: gnl|Prokka|DAKACKIE_63); gnlProkkaDAKACKIE_64 (original name was: gnl|Prokka|DAKACKIE_64); gnlProkkaDAKACKIE_65 (original name was: gnl|Prokka|DAKACKIE_65); gnlProkkaDAKACKIE_66 (original name was: gnl|Prokka|DAKACKIE_66); gnlProkkaDAKACKIE_67 (original name was: gnl|Prokka|DAKACKIE_67); gnlProkkaDAKACKIE_69 (original name was: gnl|Prokka|DAKACKIE_69); gnlProkkaDAKACKIE_70 (original name was: gnl|Prokka|DAKACKIE_70); gnlProkkaDAKACKIE_71 (original name was: gnl|Prokka|DAKACKIE_71); gnlProkkaDAKACKIE_74 (original name was: gnl|Prokka|DAKACKIE_74); gnlProkkaDAKACKIE_75 (original name was: gnl|Prokka|DAKACKIE_75); gnlProkkaDAKACKIE_77 (original name was: gnl|Prokka|DAKACKIE_77); gnlProkkaDAKACKIE_78 (original name was: gnl|Prokka|DAKACKIE_78); gnlProkkaDAKACKIE_83 (original name was: gnl|Prokka|DAKACKIE_83); gnlProkkaDAKACKIE_84 (original name was: gnl|Prokka|DAKACKIE_84); gnlProkkaDAKACKIE_85 (original name was: gnl|Prokka|DAKACKIE_85); gnlProkkaDAKACKIE_86 (original name was: gnl|Prokka|DAKACKIE_86); gnlProkkaDAKACKIE_87 (original name was: gnl|Prokka|DAKACKIE_87); gnlProkkaDAKACKIE_88 (original name was: gnl|Prokka|DAKACKIE_88); gnlProkkaDAKACKIE_89 (original name was: gnl|Prokka|DAKACKIE_89); gnlProkkaDAKACKIE_95 (original name was: gnl|Prokka|DAKACKIE_95); gnlProkkaDAKACKIE_96 (original name was: gnl|Prokka|DAKACKIE_96); gnlProkkaDAKACKIE_97 (original name was: gnl|Prokka|DAKACKIE_97); gnlProkkaDAKACKIE_98 (original name was: gnl|Prokka|DAKACKIE_98); gnlProkkaDAKACKIE_99 (original name was: gnl|Prokka|DAKACKIE_99); gnlProkkaDAKACKIE_102 (original name was: gnl|Prokka|DAKACKIE_102); gnlProkkaDAKACKIE_103 (original name was: gnl|Prokka|DAKACKIE_103); gnlProkkaDAKACKIE_104 (original name was: gnl|Prokka|DAKACKIE_104); gnlProkkaDAKACKIE_106 (original name was: gnl|Prokka|DAKACKIE_106); gnlProkkaDAKACKIE_107 (original name was: gnl|Prokka|DAKACKIE_107); gnlProkkaDAKACKIE_111 (original name was: gnl|Prokka|DAKACKIE_111); gnlProkkaDAKACKIE_112 (original name was: gnl|Prokka|DAKACKIE_112); gnlProkkaDAKACKIE_113 (original name was: gnl|Prokka|DAKACKIE_113); gnlProkkaDAKACKIE_115 (original name was: gnl|Prokka|DAKACKIE_115); gnlProkkaDAKACKIE_116 (original name was: gnl|Prokka|DAKACKIE_116); gnlProkkaDAKACKIE_117 (original name was: gnl|Prokka|DAKACKIE_117); gnlProkkaDAKACKIE_118 (original name was: gnl|Prokka|DAKACKIE_118); gnlProkkaDAKACKIE_119 (original name was: gnl|Prokka|DAKACKIE_119)

Compact view

gnlProkkaDAKACKIE_16 - Region 1 - RRE-containing

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Location: 148,717 - 166,563 nt. (total: 17,847 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaDAKACKIE_21 - Region 1 - phosphonate

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Location: 1 - 24,080 nt. (total: 24,080 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaDAKACKIE_32 - Region 1 - phosphonate

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Location: 69,922 - 83,481 nt. (total: 13,560 nt) Show pHMM detection rules used

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaDAKACKIE_35 - Region 1 - NRPS-like

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Location: 22,025 - 64,454 nt. (total: 42,430 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 22024 - 64454:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg32_45

AMP-binding (12..401): X

nrpys: Ile, Leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALFLGVVLK
Nearest Stachelhaus code(s):: Leu or Ile DAIYLGVVLK (59% 8Å match); aIle DALVFGVVLK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)