GCA_000599225.1 - 9 region(s)

Identified primary metabolite regions

c00012_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_14)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	NADH_dehydrogenase_I	E-MGC	222,989	252,925	NADH dehydrogenase I Bacteroides sp.	NADHD	100%

c00017_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_19)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	Pyruvate2acetate-formate	SCFA	33,657	56,615	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%
Region 17.2	TPP_fatty_acids	Putative	59,307	85,182

c00019_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_21)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	porA	SCFA	218,116	241,040	porA C. sporogenes	POR	80%

c00029_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_32)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 29.1	Rnf_complex	E-MGC	80,639	105,739	Rnf complex C. sporogenes	RNF	83%

c00034_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_37)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	succinate2propionate	SCFA	49,596	74,234	Succinate to propionate B. theta	PRO	66%
Region 34.2	PFOR_II_pathway	SCFA	114,882	138,436	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00037_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_40)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 37.1	TPP_AA_metabolism	Putative	72,076	98,676

c00054_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_58)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 54.1	Fumarate2succinate	SCFA	26,902	50,360	Fumarate to succinate B. thetaiotaomicron	SUC	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_1); c00002_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_2); c00003_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_3); c00004_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_4); c00005_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_6); c00006_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_7); c00007_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_9); c00008_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_10); c00009_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_11); c00010_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_12); c00011_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_13); c00013_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_15); c00014_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_16); c00015_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_17); c00016_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_18); c00018_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_20); c00020_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_22); c00021_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_23); c00022_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_24); c00023_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_25); c00024_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_26); c00025_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_27); c00026_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_28); c00027_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_30); c00028_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_31); c00030_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_33); c00031_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_34); c00032_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_35); c00033_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_36); c00035_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_38); c00036_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_39); c00038_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_41); c00039_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_42); c00040_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_43); c00041_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_44); c00042_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_45); c00043_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_46); c00044_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_47); c00045_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_48); c00046_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_49); c00047_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_51); c00048_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_52); c00049_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_53); c00050_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_54); c00051_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_55); c00052_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_56); c00053_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_57); c00055_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_60); c00056_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_62); c00057_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_63); c00058_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_64); c00059_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_65); c00060_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_66); c00061_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_67); c00062_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_69); c00063_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_70); c00064_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_71); c00065_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_74); c00066_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_75); c00067_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_77); c00068_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_78); c00069_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_83); c00070_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_84); c00071_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_85); c00072_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_86); c00073_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_87); c00074_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_88); c00075_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_89); c00076_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_95); c00077_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_96); c00078_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_97); c00079_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_98); c00080_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_99); c00081_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_102); c00082_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_103); c00083_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_104); c00084_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_106); c00085_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_107); c00086_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_111); c00087_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_112); c00088_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_113); c00089_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_115); c00090_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_116); c00091_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_117); c00092_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_118); c00093_gnlPro.. (original name was: gnl|Prokka|DAKACKIE_119)

Compact view

c00012_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 222,989 - 252,925 nt. (total: 29,937 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00017_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 33,657 - 56,615 nt. (total: 22,959 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00017_gnlPro.. - Region 2 - TPP_fatty_acids

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Location: 59,307 - 85,182 nt. (total: 25,876 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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No matches found.

c00019_gnlPro.. - Region 1 - porA

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Location: 218,116 - 241,040 nt. (total: 22,925 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00029_gnlPro.. - Region 1 - Rnf_complex

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Location: 80,639 - 105,739 nt. (total: 25,101 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00034_gnlPro.. - Region 1 - succinate2propionate

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Location: 49,596 - 74,234 nt. (total: 24,639 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00034_gnlPro.. - Region 2 - PFOR_II_pathway

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Location: 114,882 - 138,436 nt. (total: 23,555 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00037_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 72,076 - 98,676 nt. (total: 26,601 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00054_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 26,902 - 50,360 nt. (total: 23,459 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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