GCA_000599385.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaDHBAMGME_15 (original name was: gnl|Prokka|DHBAMGME_15)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	RRE-containing	70,536	89,794	polysaccharide C	Saccharide	16%

gnlProkkaDHBAMGME_27 (original name was: gnl|Prokka|DHBAMGME_27)

Region	Type	From	To	Most similar known cluster		Similarity
Region 26.1	phosphonate	1	8,247	polysaccharide B	Saccharide	23%

gnlProkkaDHBAMGME_38 (original name was: gnl|Prokka|DHBAMGME_38)

Region	Type	From	To	Most similar known cluster		Similarity
Region 37.1	NRPS-like	1	33,003

gnlProkkaDHBAMGME_99 (original name was: gnl|Prokka|DHBAMGME_99)

Region	Type	From	To	Most similar known cluster		Similarity
Region 88.1	phosphonate	1	4,083	polysaccharide B	Saccharide	10%

No secondary metabolite regions were found in these records:: gnlProkkaDHBAMGME_1 (original name was: gnl|Prokka|DHBAMGME_1); gnlProkkaDHBAMGME_2 (original name was: gnl|Prokka|DHBAMGME_2); gnlProkkaDHBAMGME_3 (original name was: gnl|Prokka|DHBAMGME_3); gnlProkkaDHBAMGME_5 (original name was: gnl|Prokka|DHBAMGME_5); gnlProkkaDHBAMGME_6 (original name was: gnl|Prokka|DHBAMGME_6); gnlProkkaDHBAMGME_7 (original name was: gnl|Prokka|DHBAMGME_7); gnlProkkaDHBAMGME_8 (original name was: gnl|Prokka|DHBAMGME_8); gnlProkkaDHBAMGME_9 (original name was: gnl|Prokka|DHBAMGME_9); gnlProkkaDHBAMGME_10 (original name was: gnl|Prokka|DHBAMGME_10); gnlProkkaDHBAMGME_11 (original name was: gnl|Prokka|DHBAMGME_11); gnlProkkaDHBAMGME_12 (original name was: gnl|Prokka|DHBAMGME_12); gnlProkkaDHBAMGME_13 (original name was: gnl|Prokka|DHBAMGME_13); gnlProkkaDHBAMGME_14 (original name was: gnl|Prokka|DHBAMGME_14); gnlProkkaDHBAMGME_16 (original name was: gnl|Prokka|DHBAMGME_16); gnlProkkaDHBAMGME_17 (original name was: gnl|Prokka|DHBAMGME_17); gnlProkkaDHBAMGME_18 (original name was: gnl|Prokka|DHBAMGME_18); gnlProkkaDHBAMGME_19 (original name was: gnl|Prokka|DHBAMGME_19); gnlProkkaDHBAMGME_20 (original name was: gnl|Prokka|DHBAMGME_20); gnlProkkaDHBAMGME_21 (original name was: gnl|Prokka|DHBAMGME_21); gnlProkkaDHBAMGME_22 (original name was: gnl|Prokka|DHBAMGME_22); gnlProkkaDHBAMGME_23 (original name was: gnl|Prokka|DHBAMGME_23); gnlProkkaDHBAMGME_24 (original name was: gnl|Prokka|DHBAMGME_24); gnlProkkaDHBAMGME_25 (original name was: gnl|Prokka|DHBAMGME_25); gnlProkkaDHBAMGME_26 (original name was: gnl|Prokka|DHBAMGME_26); gnlProkkaDHBAMGME_28 (original name was: gnl|Prokka|DHBAMGME_28); gnlProkkaDHBAMGME_29 (original name was: gnl|Prokka|DHBAMGME_29); gnlProkkaDHBAMGME_30 (original name was: gnl|Prokka|DHBAMGME_30); gnlProkkaDHBAMGME_31 (original name was: gnl|Prokka|DHBAMGME_31); gnlProkkaDHBAMGME_32 (original name was: gnl|Prokka|DHBAMGME_32); gnlProkkaDHBAMGME_33 (original name was: gnl|Prokka|DHBAMGME_33); gnlProkkaDHBAMGME_34 (original name was: gnl|Prokka|DHBAMGME_34); gnlProkkaDHBAMGME_35 (original name was: gnl|Prokka|DHBAMGME_35); gnlProkkaDHBAMGME_36 (original name was: gnl|Prokka|DHBAMGME_36); gnlProkkaDHBAMGME_37 (original name was: gnl|Prokka|DHBAMGME_37); gnlProkkaDHBAMGME_39 (original name was: gnl|Prokka|DHBAMGME_39); gnlProkkaDHBAMGME_40 (original name was: gnl|Prokka|DHBAMGME_40); gnlProkkaDHBAMGME_41 (original name was: gnl|Prokka|DHBAMGME_41); gnlProkkaDHBAMGME_42 (original name was: gnl|Prokka|DHBAMGME_42); gnlProkkaDHBAMGME_43 (original name was: gnl|Prokka|DHBAMGME_43); gnlProkkaDHBAMGME_44 (original name was: gnl|Prokka|DHBAMGME_44); gnlProkkaDHBAMGME_45 (original name was: gnl|Prokka|DHBAMGME_45); gnlProkkaDHBAMGME_46 (original name was: gnl|Prokka|DHBAMGME_46); gnlProkkaDHBAMGME_47 (original name was: gnl|Prokka|DHBAMGME_47); gnlProkkaDHBAMGME_48 (original name was: gnl|Prokka|DHBAMGME_48); gnlProkkaDHBAMGME_49 (original name was: gnl|Prokka|DHBAMGME_49); gnlProkkaDHBAMGME_50 (original name was: gnl|Prokka|DHBAMGME_50); gnlProkkaDHBAMGME_51 (original name was: gnl|Prokka|DHBAMGME_51); gnlProkkaDHBAMGME_52 (original name was: gnl|Prokka|DHBAMGME_52); gnlProkkaDHBAMGME_53 (original name was: gnl|Prokka|DHBAMGME_53); gnlProkkaDHBAMGME_54 (original name was: gnl|Prokka|DHBAMGME_54); gnlProkkaDHBAMGME_55 (original name was: gnl|Prokka|DHBAMGME_55); gnlProkkaDHBAMGME_56 (original name was: gnl|Prokka|DHBAMGME_56); gnlProkkaDHBAMGME_57 (original name was: gnl|Prokka|DHBAMGME_57); gnlProkkaDHBAMGME_58 (original name was: gnl|Prokka|DHBAMGME_58); gnlProkkaDHBAMGME_59 (original name was: gnl|Prokka|DHBAMGME_59); gnlProkkaDHBAMGME_64 (original name was: gnl|Prokka|DHBAMGME_64); gnlProkkaDHBAMGME_65 (original name was: gnl|Prokka|DHBAMGME_65); gnlProkkaDHBAMGME_67 (original name was: gnl|Prokka|DHBAMGME_67); gnlProkkaDHBAMGME_68 (original name was: gnl|Prokka|DHBAMGME_68); gnlProkkaDHBAMGME_69 (original name was: gnl|Prokka|DHBAMGME_69); gnlProkkaDHBAMGME_70 (original name was: gnl|Prokka|DHBAMGME_70); gnlProkkaDHBAMGME_71 (original name was: gnl|Prokka|DHBAMGME_71); gnlProkkaDHBAMGME_75 (original name was: gnl|Prokka|DHBAMGME_75); gnlProkkaDHBAMGME_76 (original name was: gnl|Prokka|DHBAMGME_76); gnlProkkaDHBAMGME_77 (original name was: gnl|Prokka|DHBAMGME_77); gnlProkkaDHBAMGME_78 (original name was: gnl|Prokka|DHBAMGME_78); gnlProkkaDHBAMGME_79 (original name was: gnl|Prokka|DHBAMGME_79); gnlProkkaDHBAMGME_80 (original name was: gnl|Prokka|DHBAMGME_80); gnlProkkaDHBAMGME_81 (original name was: gnl|Prokka|DHBAMGME_81); gnlProkkaDHBAMGME_82 (original name was: gnl|Prokka|DHBAMGME_82); gnlProkkaDHBAMGME_83 (original name was: gnl|Prokka|DHBAMGME_83); gnlProkkaDHBAMGME_85 (original name was: gnl|Prokka|DHBAMGME_85); gnlProkkaDHBAMGME_86 (original name was: gnl|Prokka|DHBAMGME_86); gnlProkkaDHBAMGME_88 (original name was: gnl|Prokka|DHBAMGME_88); gnlProkkaDHBAMGME_89 (original name was: gnl|Prokka|DHBAMGME_89); gnlProkkaDHBAMGME_90 (original name was: gnl|Prokka|DHBAMGME_90); gnlProkkaDHBAMGME_91 (original name was: gnl|Prokka|DHBAMGME_91); gnlProkkaDHBAMGME_92 (original name was: gnl|Prokka|DHBAMGME_92); gnlProkkaDHBAMGME_93 (original name was: gnl|Prokka|DHBAMGME_93); gnlProkkaDHBAMGME_94 (original name was: gnl|Prokka|DHBAMGME_94); gnlProkkaDHBAMGME_95 (original name was: gnl|Prokka|DHBAMGME_95); gnlProkkaDHBAMGME_96 (original name was: gnl|Prokka|DHBAMGME_96); gnlProkkaDHBAMGME_97 (original name was: gnl|Prokka|DHBAMGME_97); gnlProkkaDHBAMGME_98 (original name was: gnl|Prokka|DHBAMGME_98)

Compact view

gnlProkkaDHBAMGME_15 - Region 1 - RRE-containing

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Location: 70,536 - 89,794 nt. (total: 19,259 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene overview

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaDHBAMGME_27 - Region 1 - phosphonate

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Location: 1 - 8,247 nt. (total: 8,247 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaDHBAMGME_38 - Region 1 - NRPS-like

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Location: 1 - 33,003 nt. (total: 33,003 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 33003:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg37_15

AMP-binding (12..401): X

nrpys: Leu, Ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALFLGVVLK
Nearest Stachelhaus code(s):: Leu or Ile DAIYLGVVLK (59% 8Å match); aIle DALVFGVVLK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaDHBAMGME_99 - Region 1 - phosphonate

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Location: 1 - 4,083 nt. (total: 4,083 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1