GCA_000601075.2 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaGPBAHGLE_43 (original name was: gnl|Prokka|GPBAHGLE_43)

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	phosphonate	1	4,173	polysaccharide B	Saccharide	6%

gnlProkkaGPBAHGLE_78 (original name was: gnl|Prokka|GPBAHGLE_78)

Region	Type	From	To	Most similar known cluster		Similarity
Region 51.1	RRE-containing	148,717	166,563	polysaccharide C	Saccharide	16%

gnlProkkaGPBAHGLE_92 (original name was: gnl|Prokka|GPBAHGLE_92)

Region	Type	From	To	Most similar known cluster		Similarity
Region 65.1	phosphonate	1	8,565	polysaccharide B	Saccharide	23%

gnlProkkaGPBAHGLE_107 (original name was: gnl|Prokka|GPBAHGLE_107)

Region	Type	From	To	Most similar known cluster		Similarity
Region 79.1	NRPS-like	25,238	67,667

No secondary metabolite regions were found in these records:: gnlProkkaGPBAHGLE_1 (original name was: gnl|Prokka|GPBAHGLE_1); gnlProkkaGPBAHGLE_3 (original name was: gnl|Prokka|GPBAHGLE_3); gnlProkkaGPBAHGLE_5 (original name was: gnl|Prokka|GPBAHGLE_5); gnlProkkaGPBAHGLE_6 (original name was: gnl|Prokka|GPBAHGLE_6); gnlProkkaGPBAHGLE_8 (original name was: gnl|Prokka|GPBAHGLE_8); gnlProkkaGPBAHGLE_11 (original name was: gnl|Prokka|GPBAHGLE_11); gnlProkkaGPBAHGLE_14 (original name was: gnl|Prokka|GPBAHGLE_14); gnlProkkaGPBAHGLE_17 (original name was: gnl|Prokka|GPBAHGLE_17); gnlProkkaGPBAHGLE_18 (original name was: gnl|Prokka|GPBAHGLE_18); gnlProkkaGPBAHGLE_20 (original name was: gnl|Prokka|GPBAHGLE_20); gnlProkkaGPBAHGLE_21 (original name was: gnl|Prokka|GPBAHGLE_21); gnlProkkaGPBAHGLE_22 (original name was: gnl|Prokka|GPBAHGLE_22); gnlProkkaGPBAHGLE_23 (original name was: gnl|Prokka|GPBAHGLE_23); gnlProkkaGPBAHGLE_24 (original name was: gnl|Prokka|GPBAHGLE_24); gnlProkkaGPBAHGLE_26 (original name was: gnl|Prokka|GPBAHGLE_26); gnlProkkaGPBAHGLE_28 (original name was: gnl|Prokka|GPBAHGLE_28); gnlProkkaGPBAHGLE_29 (original name was: gnl|Prokka|GPBAHGLE_29); gnlProkkaGPBAHGLE_32 (original name was: gnl|Prokka|GPBAHGLE_32); gnlProkkaGPBAHGLE_34 (original name was: gnl|Prokka|GPBAHGLE_34); gnlProkkaGPBAHGLE_35 (original name was: gnl|Prokka|GPBAHGLE_35); gnlProkkaGPBAHGLE_36 (original name was: gnl|Prokka|GPBAHGLE_36); gnlProkkaGPBAHGLE_38 (original name was: gnl|Prokka|GPBAHGLE_38); gnlProkkaGPBAHGLE_39 (original name was: gnl|Prokka|GPBAHGLE_39); gnlProkkaGPBAHGLE_41 (original name was: gnl|Prokka|GPBAHGLE_41); gnlProkkaGPBAHGLE_44 (original name was: gnl|Prokka|GPBAHGLE_44); gnlProkkaGPBAHGLE_45 (original name was: gnl|Prokka|GPBAHGLE_45); gnlProkkaGPBAHGLE_49 (original name was: gnl|Prokka|GPBAHGLE_49); gnlProkkaGPBAHGLE_52 (original name was: gnl|Prokka|GPBAHGLE_52); gnlProkkaGPBAHGLE_55 (original name was: gnl|Prokka|GPBAHGLE_55); gnlProkkaGPBAHGLE_56 (original name was: gnl|Prokka|GPBAHGLE_56); gnlProkkaGPBAHGLE_58 (original name was: gnl|Prokka|GPBAHGLE_58); gnlProkkaGPBAHGLE_59 (original name was: gnl|Prokka|GPBAHGLE_59); gnlProkkaGPBAHGLE_60 (original name was: gnl|Prokka|GPBAHGLE_60); gnlProkkaGPBAHGLE_62 (original name was: gnl|Prokka|GPBAHGLE_62); gnlProkkaGPBAHGLE_63 (original name was: gnl|Prokka|GPBAHGLE_63); gnlProkkaGPBAHGLE_64 (original name was: gnl|Prokka|GPBAHGLE_64); gnlProkkaGPBAHGLE_65 (original name was: gnl|Prokka|GPBAHGLE_65); gnlProkkaGPBAHGLE_66 (original name was: gnl|Prokka|GPBAHGLE_66); gnlProkkaGPBAHGLE_67 (original name was: gnl|Prokka|GPBAHGLE_67); gnlProkkaGPBAHGLE_68 (original name was: gnl|Prokka|GPBAHGLE_68); gnlProkkaGPBAHGLE_69 (original name was: gnl|Prokka|GPBAHGLE_69); gnlProkkaGPBAHGLE_70 (original name was: gnl|Prokka|GPBAHGLE_70); gnlProkkaGPBAHGLE_71 (original name was: gnl|Prokka|GPBAHGLE_71); gnlProkkaGPBAHGLE_72 (original name was: gnl|Prokka|GPBAHGLE_72); gnlProkkaGPBAHGLE_73 (original name was: gnl|Prokka|GPBAHGLE_73); gnlProkkaGPBAHGLE_74 (original name was: gnl|Prokka|GPBAHGLE_74); gnlProkkaGPBAHGLE_75 (original name was: gnl|Prokka|GPBAHGLE_75); gnlProkkaGPBAHGLE_76 (original name was: gnl|Prokka|GPBAHGLE_76); gnlProkkaGPBAHGLE_77 (original name was: gnl|Prokka|GPBAHGLE_77); gnlProkkaGPBAHGLE_79 (original name was: gnl|Prokka|GPBAHGLE_79); gnlProkkaGPBAHGLE_80 (original name was: gnl|Prokka|GPBAHGLE_80); gnlProkkaGPBAHGLE_81 (original name was: gnl|Prokka|GPBAHGLE_81); gnlProkkaGPBAHGLE_82 (original name was: gnl|Prokka|GPBAHGLE_82); gnlProkkaGPBAHGLE_83 (original name was: gnl|Prokka|GPBAHGLE_83); gnlProkkaGPBAHGLE_84 (original name was: gnl|Prokka|GPBAHGLE_84); gnlProkkaGPBAHGLE_85 (original name was: gnl|Prokka|GPBAHGLE_85); gnlProkkaGPBAHGLE_86 (original name was: gnl|Prokka|GPBAHGLE_86); gnlProkkaGPBAHGLE_87 (original name was: gnl|Prokka|GPBAHGLE_87); gnlProkkaGPBAHGLE_88 (original name was: gnl|Prokka|GPBAHGLE_88); gnlProkkaGPBAHGLE_89 (original name was: gnl|Prokka|GPBAHGLE_89); gnlProkkaGPBAHGLE_90 (original name was: gnl|Prokka|GPBAHGLE_90); gnlProkkaGPBAHGLE_91 (original name was: gnl|Prokka|GPBAHGLE_91); gnlProkkaGPBAHGLE_93 (original name was: gnl|Prokka|GPBAHGLE_93); gnlProkkaGPBAHGLE_94 (original name was: gnl|Prokka|GPBAHGLE_94); gnlProkkaGPBAHGLE_95 (original name was: gnl|Prokka|GPBAHGLE_95); gnlProkkaGPBAHGLE_96 (original name was: gnl|Prokka|GPBAHGLE_96); gnlProkkaGPBAHGLE_97 (original name was: gnl|Prokka|GPBAHGLE_97); gnlProkkaGPBAHGLE_98 (original name was: gnl|Prokka|GPBAHGLE_98); gnlProkkaGPBAHGLE_99 (original name was: gnl|Prokka|GPBAHGLE_99); gnlProkkaGPBAHGLE_100 (original name was: gnl|Prokka|GPBAHGLE_100); gnlProkkaGPBAHGLE_101 (original name was: gnl|Prokka|GPBAHGLE_101); gnlProkkaGPBAHGLE_102 (original name was: gnl|Prokka|GPBAHGLE_102); gnlProkkaGPBAHGLE_103 (original name was: gnl|Prokka|GPBAHGLE_103); gnlProkkaGPBAHGLE_104 (original name was: gnl|Prokka|GPBAHGLE_104); gnlProkkaGPBAHGLE_106 (original name was: gnl|Prokka|GPBAHGLE_106); gnlProkkaGPBAHGLE_108 (original name was: gnl|Prokka|GPBAHGLE_108); gnlProkkaGPBAHGLE_109 (original name was: gnl|Prokka|GPBAHGLE_109); gnlProkkaGPBAHGLE_110 (original name was: gnl|Prokka|GPBAHGLE_110); gnlProkkaGPBAHGLE_111 (original name was: gnl|Prokka|GPBAHGLE_111); gnlProkkaGPBAHGLE_112 (original name was: gnl|Prokka|GPBAHGLE_112); gnlProkkaGPBAHGLE_113 (original name was: gnl|Prokka|GPBAHGLE_113); gnlProkkaGPBAHGLE_114 (original name was: gnl|Prokka|GPBAHGLE_114); gnlProkkaGPBAHGLE_115 (original name was: gnl|Prokka|GPBAHGLE_115); gnlProkkaGPBAHGLE_116 (original name was: gnl|Prokka|GPBAHGLE_116); gnlProkkaGPBAHGLE_117 (original name was: gnl|Prokka|GPBAHGLE_117); gnlProkkaGPBAHGLE_118 (original name was: gnl|Prokka|GPBAHGLE_118); gnlProkkaGPBAHGLE_119 (original name was: gnl|Prokka|GPBAHGLE_119); gnlProkkaGPBAHGLE_120 (original name was: gnl|Prokka|GPBAHGLE_120); gnlProkkaGPBAHGLE_121 (original name was: gnl|Prokka|GPBAHGLE_121); gnlProkkaGPBAHGLE_123 (original name was: gnl|Prokka|GPBAHGLE_123); gnlProkkaGPBAHGLE_124 (original name was: gnl|Prokka|GPBAHGLE_124); gnlProkkaGPBAHGLE_125 (original name was: gnl|Prokka|GPBAHGLE_125); gnlProkkaGPBAHGLE_126 (original name was: gnl|Prokka|GPBAHGLE_126); gnlProkkaGPBAHGLE_127 (original name was: gnl|Prokka|GPBAHGLE_127); gnlProkkaGPBAHGLE_128 (original name was: gnl|Prokka|GPBAHGLE_128); gnlProkkaGPBAHGLE_129 (original name was: gnl|Prokka|GPBAHGLE_129); gnlProkkaGPBAHGLE_130 (original name was: gnl|Prokka|GPBAHGLE_130); gnlProkkaGPBAHGLE_131 (original name was: gnl|Prokka|GPBAHGLE_131); gnlProkkaGPBAHGLE_132 (original name was: gnl|Prokka|GPBAHGLE_132); gnlProkkaGPBAHGLE_133 (original name was: gnl|Prokka|GPBAHGLE_133)

Compact view

gnlProkkaGPBAHGLE_43 - Region 1 - phosphonate

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Location: 1 - 4,173 nt. (total: 4,173 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene overview

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaGPBAHGLE_78 - Region 1 - RRE-containing

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Location: 148,717 - 166,563 nt. (total: 17,847 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaGPBAHGLE_92 - Region 1 - phosphonate

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Location: 1 - 8,565 nt. (total: 8,565 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaGPBAHGLE_107 - Region 1 - NRPS-like

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Location: 25,238 - 67,667 nt. (total: 42,430 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

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Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 25237 - 67667:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg79_47

AMP-binding (12..401): X

nrpys: Leu, Ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALFLGVVLK
Nearest Stachelhaus code(s):: Leu or Ile DAIYLGVVLK (59% 8Å match); aIle DALVFGVVLK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)