GCA_000601075.2 - 9 region(s)

Identified primary metabolite regions

c00049_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_76)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 49.1	NADH_dehydrogenase_I	E-MGC	190,590	220,526	NADH dehydrogenase I Bacteroides sp.	NADHD	100%

c00056_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_83)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 56.1	TPP_fatty_acids	Putative	1	25,414
Region 56.2	Pyruvate2acetate-formate	SCFA	28,106	51,064	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00060_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_87)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 60.1	porA	SCFA	3,930	26,854	porA C. sporogenes	POR	80%

c00077_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_104)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 77.1	Rnf_complex	E-MGC	805	25,905	Rnf complex C. sporogenes	RNF	83%

c00082_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_110)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 82.1	succinate2propionate	SCFA	49,166	73,804	Succinate to propionate B. theta	PRO	66%
Region 82.2	PFOR_II_pathway	SCFA	114,453	138,007	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00087_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_115)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 87.1	TPP_AA_metabolism	Putative	72,920	99,520

c00104_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_133)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 104.1	Fumarate2succinate	SCFA	11,898	35,356	Fumarate to succinate B. thetaiotaomicron	SUC	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_1); c00002_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_3); c00003_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_5); c00004_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_6); c00005_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_8); c00006_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_11); c00007_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_14); c00008_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_17); c00009_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_18); c00010_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_20); c00011_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_21); c00012_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_22); c00013_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_23); c00014_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_24); c00015_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_26); c00016_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_28); c00017_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_29); c00018_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_32); c00019_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_34); c00020_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_35); c00021_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_36); c00022_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_38); c00023_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_39); c00024_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_41); c00025_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_43); c00026_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_44); c00027_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_45); c00028_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_49); c00029_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_52); c00030_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_55); c00031_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_56); c00032_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_58); c00033_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_59); c00034_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_60); c00035_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_62); c00036_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_63); c00037_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_64); c00038_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_65); c00039_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_66); c00040_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_67); c00041_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_68); c00042_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_69); c00043_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_70); c00044_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_71); c00045_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_72); c00046_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_73); c00047_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_74); c00048_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_75); c00050_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_77); c00051_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_78); c00052_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_79); c00053_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_80); c00054_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_81); c00055_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_82); c00057_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_84); c00058_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_85); c00059_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_86); c00061_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_88); c00062_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_89); c00063_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_90); c00064_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_91); c00065_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_92); c00066_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_93); c00067_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_94); c00068_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_95); c00069_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_96); c00070_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_97); c00071_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_98); c00072_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_99); c00073_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_100); c00074_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_101); c00075_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_102); c00076_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_103); c00078_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_106); c00079_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_107); c00080_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_108); c00081_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_109); c00083_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_111); c00084_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_112); c00085_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_113); c00086_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_114); c00088_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_116); c00089_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_117); c00090_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_118); c00091_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_119); c00092_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_120); c00093_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_121); c00094_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_123); c00095_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_124); c00096_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_125); c00097_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_126); c00098_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_127); c00099_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_128); c00100_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_129); c00101_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_130); c00102_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_131); c00103_gnlPro.. (original name was: gnl|Prokka|GPBAHGLE_132)

Compact view

c00049_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 190,590 - 220,526 nt. (total: 29,937 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00056_gnlPro.. - Region 1 - TPP_fatty_acids

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Location: 1 - 25,414 nt. (total: 25,414 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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core biosynthetic genes

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No matches found.

c00056_gnlPro.. - Region 2 - Pyruvate2acetate-formate

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Location: 28,106 - 51,064 nt. (total: 22,959 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00060_gnlPro.. - Region 1 - porA

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Location: 3,930 - 26,854 nt. (total: 22,925 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00077_gnlPro.. - Region 1 - Rnf_complex

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Location: 805 - 25,905 nt. (total: 25,101 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00082_gnlPro.. - Region 1 - succinate2propionate

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Location: 49,166 - 73,804 nt. (total: 24,639 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00082_gnlPro.. - Region 2 - PFOR_II_pathway

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Location: 114,453 - 138,007 nt. (total: 23,555 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00087_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 72,920 - 99,520 nt. (total: 26,601 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00104_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 11,898 - 35,356 nt. (total: 23,459 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

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