GCA_000699825.1 - 7 region(s)

Identified primary metabolite regions

c00130_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_168)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 130.1	succinate2propionate	SCFA	92,346	117,054	Succinate to propionate B. theta	PRO	75%

c00131_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_169)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 131.1	porA	SCFA	64,220	87,063	porA C. sporogenes	POR	80%

c00136_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_174)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 136.1	GR_fatty_acids,Pyruvate2acetate-formate	SCFA	429,499	458,124	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00137_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_175)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 137.1	PFOR_II_pathway	SCFA	69,887	93,444	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00140_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_178)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 140.1	TPP_AA_metabolism	Putative	72,857	98,938

c00141_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_179)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 141.1	Rnf_complex	E-MGC	74,352	99,586	Rnf complex C. sporogenes	RNF	83%

c00146_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_184)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 146.1	Fumarate2succinate	SCFA	135,842	159,312	Fumarate to succinate B. thetaiotaomicron	SUC	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_1); c00002_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_3); c00003_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_4); c00004_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_5); c00005_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_7); c00006_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_9); c00007_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_10); c00008_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_11); c00009_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_13); c00010_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_14); c00011_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_15); c00012_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_16); c00013_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_17); c00014_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_18); c00015_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_19); c00016_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_21); c00017_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_22); c00018_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_23); c00019_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_24); c00020_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_25); c00021_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_26); c00022_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_28); c00023_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_30); c00024_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_31); c00025_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_32); c00026_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_33); c00027_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_35); c00028_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_38); c00029_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_39); c00030_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_40); c00031_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_41); c00032_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_42); c00033_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_43); c00034_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_44); c00035_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_46); c00036_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_48); c00037_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_49); c00038_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_50); c00039_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_52); c00040_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_53); c00041_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_54); c00042_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_56); c00043_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_57); c00044_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_58); c00045_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_60); c00046_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_61); c00047_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_62); c00048_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_63); c00049_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_64); c00050_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_65); c00051_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_66); c00052_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_67); c00053_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_68); c00054_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_69); c00055_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_72); c00056_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_73); c00057_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_75); c00058_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_76); c00059_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_77); c00060_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_78); c00061_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_81); c00062_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_82); c00063_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_84); c00064_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_85); c00065_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_86); c00066_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_87); c00067_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_88); c00068_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_90); c00069_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_91); c00070_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_92); c00071_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_93); c00072_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_94); c00073_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_95); c00074_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_96); c00075_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_97); c00076_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_98); c00077_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_100); c00078_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_101); c00079_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_105); c00080_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_107); c00081_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_108); c00082_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_109); c00083_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_110); c00084_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_112); c00085_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_113); c00086_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_114); c00087_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_115); c00088_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_118); c00089_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_119); c00090_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_120); c00091_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_121); c00092_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_123); c00093_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_124); c00094_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_125); c00095_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_126); c00096_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_127); c00097_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_128); c00098_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_129); c00099_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_130); c00100_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_132); c00101_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_133); c00102_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_137); c00103_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_138); c00104_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_139); c00105_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_140); c00106_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_141); c00107_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_142); c00108_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_143); c00109_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_144); c00110_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_145); c00111_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_146); c00112_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_147); c00113_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_148); c00114_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_149); c00115_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_150); c00116_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_152); c00117_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_153); c00118_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_154); c00119_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_156); c00120_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_157); c00121_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_159); c00122_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_160); c00123_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_161); c00124_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_162); c00125_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_163); c00126_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_164); c00127_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_165); c00128_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_166); c00129_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_167); c00132_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_170); c00133_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_171); c00134_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_172); c00135_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_173); c00138_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_176); c00139_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_177); c00142_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_180); c00143_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_181); c00144_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_182); c00145_gnlPro.. (original name was: gnl|Prokka|HPCIOHLB_183)

Compact view

c00130_gnlPro.. - Region 1 - succinate2propionate

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Location: 92,346 - 117,054 nt. (total: 24,709 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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c00131_gnlPro.. - Region 1 - porA

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Location: 64,220 - 87,063 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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core biosynthetic genes

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resistance genes

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c00136_gnlPro.. - Region 1 - GR_fatty_acids,Pyruvate2acetate-formate

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Location: 429,499 - 458,124 nt. (total: 28,626 nt) Show pHMM detection rules used

GR_fatty_acids: (minimum(1, [Gly_430_pcre, Gly_8-9_TMA, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_9_tma, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and not NRDD and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (POR or POR_N or PFOR_II))
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

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c00137_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 69,887 - 93,444 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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electron transport genes

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c00140_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 72,857 - 98,938 nt. (total: 26,082 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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regulatory genes

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No matches found.

c00141_gnlPro.. - Region 1 - Rnf_complex

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Location: 74,352 - 99,586 nt. (total: 25,235 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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resistance genes

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c00146_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 135,842 - 159,312 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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electron transport genes

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