GCA_000731855.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaPOMNJAJB_4 (original name was: gnl|Prokka|POMNJAJB_4)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	RiPP-like	41,963	54,113

gnlProkkaPOMNJAJB_22 (original name was: gnl|Prokka|POMNJAJB_22)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	T3PKS	463,157	489,345

gnlProkkaPOMNJAJB_27 (original name was: gnl|Prokka|POMNJAJB_27)

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	terpene	90,685	111,566

gnlProkkaPOMNJAJB_28 (original name was: gnl|Prokka|POMNJAJB_28)

Region	Type	From	To	Most similar known cluster		Similarity
Region 28.1	cyclic-lactone-autoinducer	205,558	226,154

Region	Type	From	To	Similarity
Region 4.1	RiPP-like	41,963	54,113
Region 22.1	T3PKS	463,157	489,345
Region 27.1	terpene	90,685	111,566
Region 28.1	cyclic-lactone-autoinducer	205,558	226,154

No secondary metabolite regions were found in these records:: gnlProkkaPOMNJAJB_1 (original name was: gnl|Prokka|POMNJAJB_1); gnlProkkaPOMNJAJB_2 (original name was: gnl|Prokka|POMNJAJB_2); gnlProkkaPOMNJAJB_3 (original name was: gnl|Prokka|POMNJAJB_3); gnlProkkaPOMNJAJB_5 (original name was: gnl|Prokka|POMNJAJB_5); gnlProkkaPOMNJAJB_6 (original name was: gnl|Prokka|POMNJAJB_6); gnlProkkaPOMNJAJB_7 (original name was: gnl|Prokka|POMNJAJB_7); gnlProkkaPOMNJAJB_8 (original name was: gnl|Prokka|POMNJAJB_8); gnlProkkaPOMNJAJB_9 (original name was: gnl|Prokka|POMNJAJB_9); gnlProkkaPOMNJAJB_10 (original name was: gnl|Prokka|POMNJAJB_10); gnlProkkaPOMNJAJB_11 (original name was: gnl|Prokka|POMNJAJB_11); gnlProkkaPOMNJAJB_12 (original name was: gnl|Prokka|POMNJAJB_12); gnlProkkaPOMNJAJB_13 (original name was: gnl|Prokka|POMNJAJB_13); gnlProkkaPOMNJAJB_14 (original name was: gnl|Prokka|POMNJAJB_14); gnlProkkaPOMNJAJB_15 (original name was: gnl|Prokka|POMNJAJB_15); gnlProkkaPOMNJAJB_16 (original name was: gnl|Prokka|POMNJAJB_16); gnlProkkaPOMNJAJB_17 (original name was: gnl|Prokka|POMNJAJB_17); gnlProkkaPOMNJAJB_18 (original name was: gnl|Prokka|POMNJAJB_18); gnlProkkaPOMNJAJB_19 (original name was: gnl|Prokka|POMNJAJB_19); gnlProkkaPOMNJAJB_20 (original name was: gnl|Prokka|POMNJAJB_20); gnlProkkaPOMNJAJB_21 (original name was: gnl|Prokka|POMNJAJB_21); gnlProkkaPOMNJAJB_23 (original name was: gnl|Prokka|POMNJAJB_23); gnlProkkaPOMNJAJB_24 (original name was: gnl|Prokka|POMNJAJB_24); gnlProkkaPOMNJAJB_25 (original name was: gnl|Prokka|POMNJAJB_25); gnlProkkaPOMNJAJB_26 (original name was: gnl|Prokka|POMNJAJB_26); gnlProkkaPOMNJAJB_29 (original name was: gnl|Prokka|POMNJAJB_29); gnlProkkaPOMNJAJB_30 (original name was: gnl|Prokka|POMNJAJB_30); gnlProkkaPOMNJAJB_31 (original name was: gnl|Prokka|POMNJAJB_31); gnlProkkaPOMNJAJB_32 (original name was: gnl|Prokka|POMNJAJB_32)

Compact view

gnlProkkaPOMNJAJB_4 - Region 1 - RiPP-like

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Location: 41,963 - 54,113 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPOMNJAJB_22 - Region 1 - T3PKS

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Location: 463,157 - 489,345 nt. (total: 26,189 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPOMNJAJB_27 - Region 1 - terpene

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Location: 90,685 - 111,566 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPOMNJAJB_28 - Region 1 - cyclic-lactone-autoinducer

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Location: 205,558 - 226,154 nt. (total: 20,597 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.