GCA_000825145.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaPPFKMMLO_9 (original name was: gnl|Prokka|PPFKMMLO_9)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	RiPP-like	5,039	15,377

gnlProkkaPPFKMMLO_11 (original name was: gnl|Prokka|PPFKMMLO_11)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	lanthipeptide-class-iii,RRE-containing	6,400	36,056

gnlProkkaPPFKMMLO_33 (original name was: gnl|Prokka|PPFKMMLO_33)

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	RiPP-like	196,098	206,493

Region	Type	From	To	Similarity
Region 9.1	RiPP-like	5,039	15,377
Region 11.1	lanthipeptide-class-iii,RRE-containing	6,400	36,056
Region 33.1	RiPP-like	196,098	206,493

No secondary metabolite regions were found in these records:: gnlProkkaPPFKMMLO_1 (original name was: gnl|Prokka|PPFKMMLO_1); gnlProkkaPPFKMMLO_2 (original name was: gnl|Prokka|PPFKMMLO_2); gnlProkkaPPFKMMLO_3 (original name was: gnl|Prokka|PPFKMMLO_3); gnlProkkaPPFKMMLO_4 (original name was: gnl|Prokka|PPFKMMLO_4); gnlProkkaPPFKMMLO_5 (original name was: gnl|Prokka|PPFKMMLO_5); gnlProkkaPPFKMMLO_6 (original name was: gnl|Prokka|PPFKMMLO_6); gnlProkkaPPFKMMLO_7 (original name was: gnl|Prokka|PPFKMMLO_7); gnlProkkaPPFKMMLO_8 (original name was: gnl|Prokka|PPFKMMLO_8); gnlProkkaPPFKMMLO_10 (original name was: gnl|Prokka|PPFKMMLO_10); gnlProkkaPPFKMMLO_12 (original name was: gnl|Prokka|PPFKMMLO_12); gnlProkkaPPFKMMLO_13 (original name was: gnl|Prokka|PPFKMMLO_13); gnlProkkaPPFKMMLO_14 (original name was: gnl|Prokka|PPFKMMLO_14); gnlProkkaPPFKMMLO_15 (original name was: gnl|Prokka|PPFKMMLO_15); gnlProkkaPPFKMMLO_16 (original name was: gnl|Prokka|PPFKMMLO_16); gnlProkkaPPFKMMLO_17 (original name was: gnl|Prokka|PPFKMMLO_17); gnlProkkaPPFKMMLO_18 (original name was: gnl|Prokka|PPFKMMLO_18); gnlProkkaPPFKMMLO_19 (original name was: gnl|Prokka|PPFKMMLO_19); gnlProkkaPPFKMMLO_20 (original name was: gnl|Prokka|PPFKMMLO_20); gnlProkkaPPFKMMLO_21 (original name was: gnl|Prokka|PPFKMMLO_21); gnlProkkaPPFKMMLO_22 (original name was: gnl|Prokka|PPFKMMLO_22); gnlProkkaPPFKMMLO_23 (original name was: gnl|Prokka|PPFKMMLO_23); gnlProkkaPPFKMMLO_24 (original name was: gnl|Prokka|PPFKMMLO_24); gnlProkkaPPFKMMLO_25 (original name was: gnl|Prokka|PPFKMMLO_25); gnlProkkaPPFKMMLO_26 (original name was: gnl|Prokka|PPFKMMLO_26); gnlProkkaPPFKMMLO_27 (original name was: gnl|Prokka|PPFKMMLO_27); gnlProkkaPPFKMMLO_28 (original name was: gnl|Prokka|PPFKMMLO_28); gnlProkkaPPFKMMLO_29 (original name was: gnl|Prokka|PPFKMMLO_29); gnlProkkaPPFKMMLO_30 (original name was: gnl|Prokka|PPFKMMLO_30); gnlProkkaPPFKMMLO_31 (original name was: gnl|Prokka|PPFKMMLO_31); gnlProkkaPPFKMMLO_32 (original name was: gnl|Prokka|PPFKMMLO_32); gnlProkkaPPFKMMLO_34 (original name was: gnl|Prokka|PPFKMMLO_34); gnlProkkaPPFKMMLO_35 (original name was: gnl|Prokka|PPFKMMLO_35); gnlProkkaPPFKMMLO_36 (original name was: gnl|Prokka|PPFKMMLO_36); gnlProkkaPPFKMMLO_37 (original name was: gnl|Prokka|PPFKMMLO_37); gnlProkkaPPFKMMLO_38 (original name was: gnl|Prokka|PPFKMMLO_38); gnlProkkaPPFKMMLO_39 (original name was: gnl|Prokka|PPFKMMLO_39); gnlProkkaPPFKMMLO_40 (original name was: gnl|Prokka|PPFKMMLO_40); gnlProkkaPPFKMMLO_41 (original name was: gnl|Prokka|PPFKMMLO_41); gnlProkkaPPFKMMLO_42 (original name was: gnl|Prokka|PPFKMMLO_42); gnlProkkaPPFKMMLO_43 (original name was: gnl|Prokka|PPFKMMLO_43); gnlProkkaPPFKMMLO_44 (original name was: gnl|Prokka|PPFKMMLO_44); gnlProkkaPPFKMMLO_45 (original name was: gnl|Prokka|PPFKMMLO_45); gnlProkkaPPFKMMLO_46 (original name was: gnl|Prokka|PPFKMMLO_46); gnlProkkaPPFKMMLO_47 (original name was: gnl|Prokka|PPFKMMLO_47); gnlProkkaPPFKMMLO_48 (original name was: gnl|Prokka|PPFKMMLO_48); gnlProkkaPPFKMMLO_49 (original name was: gnl|Prokka|PPFKMMLO_49); gnlProkkaPPFKMMLO_50 (original name was: gnl|Prokka|PPFKMMLO_50); gnlProkkaPPFKMMLO_51 (original name was: gnl|Prokka|PPFKMMLO_51); gnlProkkaPPFKMMLO_52 (original name was: gnl|Prokka|PPFKMMLO_52); gnlProkkaPPFKMMLO_53 (original name was: gnl|Prokka|PPFKMMLO_53); gnlProkkaPPFKMMLO_54 (original name was: gnl|Prokka|PPFKMMLO_54); gnlProkkaPPFKMMLO_55 (original name was: gnl|Prokka|PPFKMMLO_55); gnlProkkaPPFKMMLO_56 (original name was: gnl|Prokka|PPFKMMLO_56)

Compact view

gnlProkkaPPFKMMLO_9 - Region 1 - RiPP-like

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Location: 5,039 - 15,377 nt. (total: 10,339 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPPFKMMLO_11 - Region 1 - RRE-containing,lanthipeptide-class-iii

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Location: 6,400 - 36,056 nt. (total: 29,657 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iii: (micKC and not PKS_KS)
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaPPFKMMLO_33 - Region 1 - RiPP-like

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Location: 196,098 - 206,493 nt. (total: 10,396 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.