GCA_000963335.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaHMOBGBMI_4 (original name was: gnl|Prokka|HMOBGBMI_4)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	RiPP-like	126,647	138,743	quinolidomicin A	Polyketide	3%

gnlProkkaHMOBGBMI_10 (original name was: gnl|Prokka|HMOBGBMI_10)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	T3PKS	161,658	202,824
Region 10.2	RiPP-like	370,666	380,938

gnlProkkaHMOBGBMI_20 (original name was: gnl|Prokka|HMOBGBMI_20)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	RiPP-like	1	6,035

gnlProkkaHMOBGBMI_21 (original name was: gnl|Prokka|HMOBGBMI_21)

Region	Type	From	To	Most similar known cluster		Similarity
Region 21.1	RiPP-like	12,799	31,248

No secondary metabolite regions were found in these records:: gnlProkkaHMOBGBMI_1 (original name was: gnl|Prokka|HMOBGBMI_1); gnlProkkaHMOBGBMI_2 (original name was: gnl|Prokka|HMOBGBMI_2); gnlProkkaHMOBGBMI_3 (original name was: gnl|Prokka|HMOBGBMI_3); gnlProkkaHMOBGBMI_5 (original name was: gnl|Prokka|HMOBGBMI_5); gnlProkkaHMOBGBMI_6 (original name was: gnl|Prokka|HMOBGBMI_6); gnlProkkaHMOBGBMI_7 (original name was: gnl|Prokka|HMOBGBMI_7); gnlProkkaHMOBGBMI_8 (original name was: gnl|Prokka|HMOBGBMI_8); gnlProkkaHMOBGBMI_9 (original name was: gnl|Prokka|HMOBGBMI_9); gnlProkkaHMOBGBMI_11 (original name was: gnl|Prokka|HMOBGBMI_11); gnlProkkaHMOBGBMI_12 (original name was: gnl|Prokka|HMOBGBMI_12); gnlProkkaHMOBGBMI_13 (original name was: gnl|Prokka|HMOBGBMI_13); gnlProkkaHMOBGBMI_14 (original name was: gnl|Prokka|HMOBGBMI_14); gnlProkkaHMOBGBMI_15 (original name was: gnl|Prokka|HMOBGBMI_15); gnlProkkaHMOBGBMI_16 (original name was: gnl|Prokka|HMOBGBMI_16); gnlProkkaHMOBGBMI_17 (original name was: gnl|Prokka|HMOBGBMI_17); gnlProkkaHMOBGBMI_18 (original name was: gnl|Prokka|HMOBGBMI_18); gnlProkkaHMOBGBMI_19 (original name was: gnl|Prokka|HMOBGBMI_19)

Compact view

gnlProkkaHMOBGBMI_4 - Region 1 - RiPP-like

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Location: 126,647 - 138,743 nt. (total: 12,097 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaHMOBGBMI_10 - Region 1 - T3PKS

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Location: 161,658 - 202,824 nt. (total: 41,167 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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NRPS/PKS domains

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHMOBGBMI_10 - Region 2 - RiPP-like

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Location: 370,666 - 380,938 nt. (total: 10,273 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHMOBGBMI_20 - Region 1 - RiPP-like

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Location: 1 - 6,035 nt. (total: 6,035 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHMOBGBMI_21 - Region 1 - RiPP-like

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Location: 12,799 - 31,248 nt. (total: 18,450 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.