GCA_001010175.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaDPKCHLJI_10 (original name was: gnl|Prokka|DPKCHLJI_10)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	RiPP-like	1,294	13,444

gnlProkkaDPKCHLJI_11 (original name was: gnl|Prokka|DPKCHLJI_11)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	T3PKS	50,899	92,068

gnlProkkaDPKCHLJI_15 (original name was: gnl|Prokka|DPKCHLJI_15)

Region	Type	From	To	Most similar known cluster		Similarity
Region 15.1	terpene	27,931	48,812

gnlProkkaDPKCHLJI_16 (original name was: gnl|Prokka|DPKCHLJI_16)

Region	Type	From	To	Most similar known cluster		Similarity
Region 16.1	cyclic-lactone-autoinducer	345,482	366,187

Region	Type	From	To	Similarity
Region 10.1	RiPP-like	1,294	13,444
Region 11.1	T3PKS	50,899	92,068
Region 15.1	terpene	27,931	48,812
Region 16.1	cyclic-lactone-autoinducer	345,482	366,187

No secondary metabolite regions were found in these records:: gnlProkkaDPKCHLJI_1 (original name was: gnl|Prokka|DPKCHLJI_1); gnlProkkaDPKCHLJI_2 (original name was: gnl|Prokka|DPKCHLJI_2); gnlProkkaDPKCHLJI_3 (original name was: gnl|Prokka|DPKCHLJI_3); gnlProkkaDPKCHLJI_4 (original name was: gnl|Prokka|DPKCHLJI_4); gnlProkkaDPKCHLJI_5 (original name was: gnl|Prokka|DPKCHLJI_5); gnlProkkaDPKCHLJI_6 (original name was: gnl|Prokka|DPKCHLJI_6); gnlProkkaDPKCHLJI_7 (original name was: gnl|Prokka|DPKCHLJI_7); gnlProkkaDPKCHLJI_8 (original name was: gnl|Prokka|DPKCHLJI_8); gnlProkkaDPKCHLJI_9 (original name was: gnl|Prokka|DPKCHLJI_9); gnlProkkaDPKCHLJI_12 (original name was: gnl|Prokka|DPKCHLJI_12); gnlProkkaDPKCHLJI_13 (original name was: gnl|Prokka|DPKCHLJI_13); gnlProkkaDPKCHLJI_14 (original name was: gnl|Prokka|DPKCHLJI_14); gnlProkkaDPKCHLJI_17 (original name was: gnl|Prokka|DPKCHLJI_17); gnlProkkaDPKCHLJI_18 (original name was: gnl|Prokka|DPKCHLJI_18)

Compact view

gnlProkkaDPKCHLJI_10 - Region 1 - RiPP-like

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Location: 1,294 - 13,444 nt. (total: 12,151 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaDPKCHLJI_11 - Region 1 - T3PKS

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Location: 50,899 - 92,068 nt. (total: 41,170 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaDPKCHLJI_15 - Region 1 - terpene

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Location: 27,931 - 48,812 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaDPKCHLJI_16 - Region 1 - cyclic-lactone-autoinducer

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Location: 345,482 - 366,187 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.