GCA_001056335.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaNOEMIMDN_23 (original name was: gnl|Prokka|NOEMIMDN_23)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	NRPS-like	1	37,308

gnlProkkaNOEMIMDN_46 (original name was: gnl|Prokka|NOEMIMDN_46)

Region	Type	From	To	Most similar known cluster		Similarity
Region 38.1	phosphonate	1	10,228	polysaccharide B	Saccharide	16%

gnlProkkaNOEMIMDN_54 (original name was: gnl|Prokka|NOEMIMDN_54)

Region	Type	From	To	Most similar known cluster		Similarity
Region 46.1	phosphonate	1	7,737	polysaccharide B	Saccharide	20%

gnlProkkaNOEMIMDN_56 (original name was: gnl|Prokka|NOEMIMDN_56)

Region	Type	From	To	Most similar known cluster		Similarity
Region 47.1	phosphonate	1	11,395	polysaccharide B	Saccharide	16%

gnlProkkaNOEMIMDN_66 (original name was: gnl|Prokka|NOEMIMDN_66)

Region	Type	From	To	Most similar known cluster		Similarity
Region 56.1	phosphonate	39,866	53,425	polysaccharide B	Saccharide	13%

gnlProkkaNOEMIMDN_102 (original name was: gnl|Prokka|NOEMIMDN_102)

Region	Type	From	To	Most similar known cluster		Similarity
Region 88.1	RRE-containing	13,326	33,679	polysaccharide C	Saccharide	16%

Region	Type	From	To	Most similar known cluster	Similarity
Region 18.1	NRPS-like	1	37,308
Region 38.1	phosphonate	1	10,228	polysaccharide B	Saccharide	16%
Region 46.1	phosphonate	1	7,737	polysaccharide B	Saccharide	20%
Region 47.1	phosphonate	1	11,395	polysaccharide B	Saccharide	16%
Region 56.1	phosphonate	39,866	53,425	polysaccharide B	Saccharide	13%
Region 88.1	RRE-containing	13,326	33,679	polysaccharide C	Saccharide	16%

No secondary metabolite regions were found in these records:: gnlProkkaNOEMIMDN_2 (original name was: gnl|Prokka|NOEMIMDN_2); gnlProkkaNOEMIMDN_5 (original name was: gnl|Prokka|NOEMIMDN_5); gnlProkkaNOEMIMDN_7 (original name was: gnl|Prokka|NOEMIMDN_7); gnlProkkaNOEMIMDN_8 (original name was: gnl|Prokka|NOEMIMDN_8); gnlProkkaNOEMIMDN_9 (original name was: gnl|Prokka|NOEMIMDN_9); gnlProkkaNOEMIMDN_11 (original name was: gnl|Prokka|NOEMIMDN_11); gnlProkkaNOEMIMDN_12 (original name was: gnl|Prokka|NOEMIMDN_12); gnlProkkaNOEMIMDN_13 (original name was: gnl|Prokka|NOEMIMDN_13); gnlProkkaNOEMIMDN_14 (original name was: gnl|Prokka|NOEMIMDN_14); gnlProkkaNOEMIMDN_15 (original name was: gnl|Prokka|NOEMIMDN_15); gnlProkkaNOEMIMDN_16 (original name was: gnl|Prokka|NOEMIMDN_16); gnlProkkaNOEMIMDN_17 (original name was: gnl|Prokka|NOEMIMDN_17); gnlProkkaNOEMIMDN_18 (original name was: gnl|Prokka|NOEMIMDN_18); gnlProkkaNOEMIMDN_19 (original name was: gnl|Prokka|NOEMIMDN_19); gnlProkkaNOEMIMDN_20 (original name was: gnl|Prokka|NOEMIMDN_20); gnlProkkaNOEMIMDN_21 (original name was: gnl|Prokka|NOEMIMDN_21); gnlProkkaNOEMIMDN_22 (original name was: gnl|Prokka|NOEMIMDN_22); gnlProkkaNOEMIMDN_25 (original name was: gnl|Prokka|NOEMIMDN_25); gnlProkkaNOEMIMDN_26 (original name was: gnl|Prokka|NOEMIMDN_26); gnlProkkaNOEMIMDN_27 (original name was: gnl|Prokka|NOEMIMDN_27); gnlProkkaNOEMIMDN_28 (original name was: gnl|Prokka|NOEMIMDN_28); gnlProkkaNOEMIMDN_29 (original name was: gnl|Prokka|NOEMIMDN_29); gnlProkkaNOEMIMDN_30 (original name was: gnl|Prokka|NOEMIMDN_30); gnlProkkaNOEMIMDN_31 (original name was: gnl|Prokka|NOEMIMDN_31); gnlProkkaNOEMIMDN_32 (original name was: gnl|Prokka|NOEMIMDN_32); gnlProkkaNOEMIMDN_34 (original name was: gnl|Prokka|NOEMIMDN_34); gnlProkkaNOEMIMDN_35 (original name was: gnl|Prokka|NOEMIMDN_35); gnlProkkaNOEMIMDN_36 (original name was: gnl|Prokka|NOEMIMDN_36); gnlProkkaNOEMIMDN_37 (original name was: gnl|Prokka|NOEMIMDN_37); gnlProkkaNOEMIMDN_38 (original name was: gnl|Prokka|NOEMIMDN_38); gnlProkkaNOEMIMDN_39 (original name was: gnl|Prokka|NOEMIMDN_39); gnlProkkaNOEMIMDN_40 (original name was: gnl|Prokka|NOEMIMDN_40); gnlProkkaNOEMIMDN_41 (original name was: gnl|Prokka|NOEMIMDN_41); gnlProkkaNOEMIMDN_43 (original name was: gnl|Prokka|NOEMIMDN_43); gnlProkkaNOEMIMDN_44 (original name was: gnl|Prokka|NOEMIMDN_44); gnlProkkaNOEMIMDN_45 (original name was: gnl|Prokka|NOEMIMDN_45); gnlProkkaNOEMIMDN_47 (original name was: gnl|Prokka|NOEMIMDN_47); gnlProkkaNOEMIMDN_48 (original name was: gnl|Prokka|NOEMIMDN_48); gnlProkkaNOEMIMDN_49 (original name was: gnl|Prokka|NOEMIMDN_49); gnlProkkaNOEMIMDN_50 (original name was: gnl|Prokka|NOEMIMDN_50); gnlProkkaNOEMIMDN_51 (original name was: gnl|Prokka|NOEMIMDN_51); gnlProkkaNOEMIMDN_52 (original name was: gnl|Prokka|NOEMIMDN_52); gnlProkkaNOEMIMDN_53 (original name was: gnl|Prokka|NOEMIMDN_53); gnlProkkaNOEMIMDN_57 (original name was: gnl|Prokka|NOEMIMDN_57); gnlProkkaNOEMIMDN_59 (original name was: gnl|Prokka|NOEMIMDN_59); gnlProkkaNOEMIMDN_60 (original name was: gnl|Prokka|NOEMIMDN_60); gnlProkkaNOEMIMDN_61 (original name was: gnl|Prokka|NOEMIMDN_61); gnlProkkaNOEMIMDN_62 (original name was: gnl|Prokka|NOEMIMDN_62); gnlProkkaNOEMIMDN_63 (original name was: gnl|Prokka|NOEMIMDN_63); gnlProkkaNOEMIMDN_64 (original name was: gnl|Prokka|NOEMIMDN_64); gnlProkkaNOEMIMDN_65 (original name was: gnl|Prokka|NOEMIMDN_65); gnlProkkaNOEMIMDN_67 (original name was: gnl|Prokka|NOEMIMDN_67); gnlProkkaNOEMIMDN_68 (original name was: gnl|Prokka|NOEMIMDN_68); gnlProkkaNOEMIMDN_69 (original name was: gnl|Prokka|NOEMIMDN_69); gnlProkkaNOEMIMDN_70 (original name was: gnl|Prokka|NOEMIMDN_70); gnlProkkaNOEMIMDN_71 (original name was: gnl|Prokka|NOEMIMDN_71); gnlProkkaNOEMIMDN_72 (original name was: gnl|Prokka|NOEMIMDN_72); gnlProkkaNOEMIMDN_73 (original name was: gnl|Prokka|NOEMIMDN_73); gnlProkkaNOEMIMDN_74 (original name was: gnl|Prokka|NOEMIMDN_74); gnlProkkaNOEMIMDN_75 (original name was: gnl|Prokka|NOEMIMDN_75); gnlProkkaNOEMIMDN_76 (original name was: gnl|Prokka|NOEMIMDN_76); gnlProkkaNOEMIMDN_77 (original name was: gnl|Prokka|NOEMIMDN_77); gnlProkkaNOEMIMDN_78 (original name was: gnl|Prokka|NOEMIMDN_78); gnlProkkaNOEMIMDN_80 (original name was: gnl|Prokka|NOEMIMDN_80); gnlProkkaNOEMIMDN_81 (original name was: gnl|Prokka|NOEMIMDN_81); gnlProkkaNOEMIMDN_82 (original name was: gnl|Prokka|NOEMIMDN_82); gnlProkkaNOEMIMDN_83 (original name was: gnl|Prokka|NOEMIMDN_83); gnlProkkaNOEMIMDN_84 (original name was: gnl|Prokka|NOEMIMDN_84); gnlProkkaNOEMIMDN_85 (original name was: gnl|Prokka|NOEMIMDN_85); gnlProkkaNOEMIMDN_86 (original name was: gnl|Prokka|NOEMIMDN_86); gnlProkkaNOEMIMDN_87 (original name was: gnl|Prokka|NOEMIMDN_87); gnlProkkaNOEMIMDN_89 (original name was: gnl|Prokka|NOEMIMDN_89); gnlProkkaNOEMIMDN_90 (original name was: gnl|Prokka|NOEMIMDN_90); gnlProkkaNOEMIMDN_91 (original name was: gnl|Prokka|NOEMIMDN_91); gnlProkkaNOEMIMDN_92 (original name was: gnl|Prokka|NOEMIMDN_92); gnlProkkaNOEMIMDN_93 (original name was: gnl|Prokka|NOEMIMDN_93); gnlProkkaNOEMIMDN_94 (original name was: gnl|Prokka|NOEMIMDN_94); gnlProkkaNOEMIMDN_95 (original name was: gnl|Prokka|NOEMIMDN_95); gnlProkkaNOEMIMDN_96 (original name was: gnl|Prokka|NOEMIMDN_96); gnlProkkaNOEMIMDN_99 (original name was: gnl|Prokka|NOEMIMDN_99); gnlProkkaNOEMIMDN_100 (original name was: gnl|Prokka|NOEMIMDN_100); gnlProkkaNOEMIMDN_101 (original name was: gnl|Prokka|NOEMIMDN_101); gnlProkkaNOEMIMDN_103 (original name was: gnl|Prokka|NOEMIMDN_103); gnlProkkaNOEMIMDN_104 (original name was: gnl|Prokka|NOEMIMDN_104); gnlProkkaNOEMIMDN_105 (original name was: gnl|Prokka|NOEMIMDN_105); gnlProkkaNOEMIMDN_106 (original name was: gnl|Prokka|NOEMIMDN_106); gnlProkkaNOEMIMDN_107 (original name was: gnl|Prokka|NOEMIMDN_107); gnlProkkaNOEMIMDN_108 (original name was: gnl|Prokka|NOEMIMDN_108); gnlProkkaNOEMIMDN_109 (original name was: gnl|Prokka|NOEMIMDN_109); gnlProkkaNOEMIMDN_110 (original name was: gnl|Prokka|NOEMIMDN_110); gnlProkkaNOEMIMDN_111 (original name was: gnl|Prokka|NOEMIMDN_111); gnlProkkaNOEMIMDN_112 (original name was: gnl|Prokka|NOEMIMDN_112); gnlProkkaNOEMIMDN_114 (original name was: gnl|Prokka|NOEMIMDN_114); gnlProkkaNOEMIMDN_115 (original name was: gnl|Prokka|NOEMIMDN_115); gnlProkkaNOEMIMDN_116 (original name was: gnl|Prokka|NOEMIMDN_116); gnlProkkaNOEMIMDN_117 (original name was: gnl|Prokka|NOEMIMDN_117); gnlProkkaNOEMIMDN_118 (original name was: gnl|Prokka|NOEMIMDN_118); gnlProkkaNOEMIMDN_119 (original name was: gnl|Prokka|NOEMIMDN_119); gnlProkkaNOEMIMDN_120 (original name was: gnl|Prokka|NOEMIMDN_120); gnlProkkaNOEMIMDN_121 (original name was: gnl|Prokka|NOEMIMDN_121); gnlProkkaNOEMIMDN_122 (original name was: gnl|Prokka|NOEMIMDN_122); gnlProkkaNOEMIMDN_123 (original name was: gnl|Prokka|NOEMIMDN_123); gnlProkkaNOEMIMDN_124 (original name was: gnl|Prokka|NOEMIMDN_124); gnlProkkaNOEMIMDN_125 (original name was: gnl|Prokka|NOEMIMDN_125); gnlProkkaNOEMIMDN_126 (original name was: gnl|Prokka|NOEMIMDN_126); gnlProkkaNOEMIMDN_127 (original name was: gnl|Prokka|NOEMIMDN_127); gnlProkkaNOEMIMDN_128 (original name was: gnl|Prokka|NOEMIMDN_128); gnlProkkaNOEMIMDN_130 (original name was: gnl|Prokka|NOEMIMDN_130); gnlProkkaNOEMIMDN_131 (original name was: gnl|Prokka|NOEMIMDN_131); gnlProkkaNOEMIMDN_132 (original name was: gnl|Prokka|NOEMIMDN_132); gnlProkkaNOEMIMDN_133 (original name was: gnl|Prokka|NOEMIMDN_133); gnlProkkaNOEMIMDN_135 (original name was: gnl|Prokka|NOEMIMDN_135); gnlProkkaNOEMIMDN_136 (original name was: gnl|Prokka|NOEMIMDN_136); gnlProkkaNOEMIMDN_137 (original name was: gnl|Prokka|NOEMIMDN_137); gnlProkkaNOEMIMDN_138 (original name was: gnl|Prokka|NOEMIMDN_138); gnlProkkaNOEMIMDN_139 (original name was: gnl|Prokka|NOEMIMDN_139); gnlProkkaNOEMIMDN_140 (original name was: gnl|Prokka|NOEMIMDN_140); gnlProkkaNOEMIMDN_141 (original name was: gnl|Prokka|NOEMIMDN_141); gnlProkkaNOEMIMDN_142 (original name was: gnl|Prokka|NOEMIMDN_142); gnlProkkaNOEMIMDN_143 (original name was: gnl|Prokka|NOEMIMDN_143); gnlProkkaNOEMIMDN_144 (original name was: gnl|Prokka|NOEMIMDN_144); gnlProkkaNOEMIMDN_145 (original name was: gnl|Prokka|NOEMIMDN_145); gnlProkkaNOEMIMDN_146 (original name was: gnl|Prokka|NOEMIMDN_146); gnlProkkaNOEMIMDN_148 (original name was: gnl|Prokka|NOEMIMDN_148); gnlProkkaNOEMIMDN_149 (original name was: gnl|Prokka|NOEMIMDN_149); gnlProkkaNOEMIMDN_150 (original name was: gnl|Prokka|NOEMIMDN_150)

Compact view

gnlProkkaNOEMIMDN_23 - Region 1 - NRPS-like

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Location: 1 - 37,308 nt. (total: 37,308 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 37308:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg18_20

AMP-binding (12..401): X

nrpys: Ile, Leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALFLGVVLK
Nearest Stachelhaus code(s):: Leu or Ile DAIYLGVVLK (59% 8Å match); aIle DALVFGVVLK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaNOEMIMDN_46 - Region 1 - phosphonate

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Location: 1 - 10,228 nt. (total: 10,228 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaNOEMIMDN_54 - Region 1 - phosphonate

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Location: 1 - 7,737 nt. (total: 7,737 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaNOEMIMDN_56 - Region 1 - phosphonate

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Location: 1 - 11,395 nt. (total: 11,395 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaNOEMIMDN_66 - Region 1 - phosphonate

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Location: 39,866 - 53,425 nt. (total: 13,560 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaNOEMIMDN_102 - Region 1 - RRE-containing

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Location: 13,326 - 33,679 nt. (total: 20,354 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1