GCA_001058775.1 - 9 region(s)

Identified primary metabolite regions

c00019_gnlPro.. (original name was: gnl|Prokka|COEODNAD_29)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	PFOR_II_pathway	SCFA	4,397	27,951	PFOR II pathway B. thetaiotaomicron	PFORII	100%
Region 19.2	succinate2propionate	SCFA	68,536	93,174	Succinate to propionate B. theta	PRO	66%

c00044_gnlPro.. (original name was: gnl|Prokka|COEODNAD_74)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	NADH_dehydrogenase_I	E-MGC	19,509	47,996	NADH dehydrogenase I Bacteroides sp.	NADHD	100%

c00062_gnlPro.. (original name was: gnl|Prokka|COEODNAD_99)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 62.1	Fumarate2succinate	SCFA	7,856	31,314	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00099_gnlPro.. (original name was: gnl|Prokka|COEODNAD_151)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 99.1	Pyruvate2acetate-formate	SCFA	1	13,256	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%
Region 99.2	TPP_fatty_acids	Putative	15,949	41,824

c00109_gnlPro.. (original name was: gnl|Prokka|COEODNAD_171)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 109.1	porA	SCFA	1	21,886	porA C. sporogenes	POR	80%

c00115_gnlPro.. (original name was: gnl|Prokka|COEODNAD_179)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 115.1	TPP_AA_metabolism	Putative	58,952	85,552

c00199_gnlPro.. (original name was: gnl|Prokka|COEODNAD_289)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 199.1	Rnf_complex	E-MGC	1	16,281	Rnf complex C. sporogenes	RNF	83%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|COEODNAD_1); c00002_gnlPro.. (original name was: gnl|Prokka|COEODNAD_3); c00003_gnlPro.. (original name was: gnl|Prokka|COEODNAD_7); c00004_gnlPro.. (original name was: gnl|Prokka|COEODNAD_8); c00005_gnlPro.. (original name was: gnl|Prokka|COEODNAD_9); c00006_gnlPro.. (original name was: gnl|Prokka|COEODNAD_10); c00007_gnlPro.. (original name was: gnl|Prokka|COEODNAD_12); c00008_gnlPro.. (original name was: gnl|Prokka|COEODNAD_13); c00009_gnlPro.. (original name was: gnl|Prokka|COEODNAD_14); c00010_gnlPro.. (original name was: gnl|Prokka|COEODNAD_15); c00011_gnlPro.. (original name was: gnl|Prokka|COEODNAD_16); c00012_gnlPro.. (original name was: gnl|Prokka|COEODNAD_19); c00013_gnlPro.. (original name was: gnl|Prokka|COEODNAD_20); c00014_gnlPro.. (original name was: gnl|Prokka|COEODNAD_21); c00015_gnlPro.. (original name was: gnl|Prokka|COEODNAD_22); c00016_gnlPro.. (original name was: gnl|Prokka|COEODNAD_25); c00017_gnlPro.. (original name was: gnl|Prokka|COEODNAD_27); c00018_gnlPro.. (original name was: gnl|Prokka|COEODNAD_28); c00020_gnlPro.. (original name was: gnl|Prokka|COEODNAD_30); c00021_gnlPro.. (original name was: gnl|Prokka|COEODNAD_32); c00022_gnlPro.. (original name was: gnl|Prokka|COEODNAD_38); c00023_gnlPro.. (original name was: gnl|Prokka|COEODNAD_40); c00024_gnlPro.. (original name was: gnl|Prokka|COEODNAD_42); c00025_gnlPro.. (original name was: gnl|Prokka|COEODNAD_43); c00026_gnlPro.. (original name was: gnl|Prokka|COEODNAD_46); c00027_gnlPro.. (original name was: gnl|Prokka|COEODNAD_47); c00028_gnlPro.. (original name was: gnl|Prokka|COEODNAD_50); c00029_gnlPro.. (original name was: gnl|Prokka|COEODNAD_51); c00030_gnlPro.. (original name was: gnl|Prokka|COEODNAD_52); c00031_gnlPro.. (original name was: gnl|Prokka|COEODNAD_55); c00032_gnlPro.. (original name was: gnl|Prokka|COEODNAD_57); c00033_gnlPro.. (original name was: gnl|Prokka|COEODNAD_58); c00034_gnlPro.. (original name was: gnl|Prokka|COEODNAD_61); c00035_gnlPro.. (original name was: gnl|Prokka|COEODNAD_62); c00036_gnlPro.. (original name was: gnl|Prokka|COEODNAD_63); c00037_gnlPro.. (original name was: gnl|Prokka|COEODNAD_64); c00038_gnlPro.. (original name was: gnl|Prokka|COEODNAD_66); c00039_gnlPro.. (original name was: gnl|Prokka|COEODNAD_67); c00040_gnlPro.. (original name was: gnl|Prokka|COEODNAD_68); c00041_gnlPro.. (original name was: gnl|Prokka|COEODNAD_70); c00042_gnlPro.. (original name was: gnl|Prokka|COEODNAD_71); c00043_gnlPro.. (original name was: gnl|Prokka|COEODNAD_72); c00045_gnlPro.. (original name was: gnl|Prokka|COEODNAD_75); c00046_gnlPro.. (original name was: gnl|Prokka|COEODNAD_76); c00047_gnlPro.. (original name was: gnl|Prokka|COEODNAD_77); c00048_gnlPro.. (original name was: gnl|Prokka|COEODNAD_78); c00049_gnlPro.. (original name was: gnl|Prokka|COEODNAD_79); c00050_gnlPro.. (original name was: gnl|Prokka|COEODNAD_81); c00051_gnlPro.. (original name was: gnl|Prokka|COEODNAD_82); c00052_gnlPro.. (original name was: gnl|Prokka|COEODNAD_83); c00053_gnlPro.. (original name was: gnl|Prokka|COEODNAD_84); c00054_gnlPro.. (original name was: gnl|Prokka|COEODNAD_86); c00055_gnlPro.. (original name was: gnl|Prokka|COEODNAD_87); c00056_gnlPro.. (original name was: gnl|Prokka|COEODNAD_88); c00057_gnlPro.. (original name was: gnl|Prokka|COEODNAD_89); c00058_gnlPro.. (original name was: gnl|Prokka|COEODNAD_90); c00059_gnlPro.. (original name was: gnl|Prokka|COEODNAD_92); c00060_gnlPro.. (original name was: gnl|Prokka|COEODNAD_93); c00061_gnlPro.. (original name was: gnl|Prokka|COEODNAD_94); c00063_gnlPro.. (original name was: gnl|Prokka|COEODNAD_100); c00064_gnlPro.. (original name was: gnl|Prokka|COEODNAD_101); c00065_gnlPro.. (original name was: gnl|Prokka|COEODNAD_102); c00066_gnlPro.. (original name was: gnl|Prokka|COEODNAD_103); c00067_gnlPro.. (original name was: gnl|Prokka|COEODNAD_104); c00068_gnlPro.. (original name was: gnl|Prokka|COEODNAD_105); c00069_gnlPro.. (original name was: gnl|Prokka|COEODNAD_106); c00070_gnlPro.. (original name was: gnl|Prokka|COEODNAD_109); c00071_gnlPro.. (original name was: gnl|Prokka|COEODNAD_111); c00072_gnlPro.. (original name was: gnl|Prokka|COEODNAD_112); c00073_gnlPro.. (original name was: gnl|Prokka|COEODNAD_113); c00074_gnlPro.. (original name was: gnl|Prokka|COEODNAD_118); c00075_gnlPro.. (original name was: gnl|Prokka|COEODNAD_119); c00076_gnlPro.. (original name was: gnl|Prokka|COEODNAD_121); c00077_gnlPro.. (original name was: gnl|Prokka|COEODNAD_122); c00078_gnlPro.. (original name was: gnl|Prokka|COEODNAD_123); c00079_gnlPro.. (original name was: gnl|Prokka|COEODNAD_124); c00080_gnlPro.. (original name was: gnl|Prokka|COEODNAD_125); c00081_gnlPro.. (original name was: gnl|Prokka|COEODNAD_126); c00082_gnlPro.. (original name was: gnl|Prokka|COEODNAD_127); c00083_gnlPro.. (original name was: gnl|Prokka|COEODNAD_128); c00084_gnlPro.. (original name was: gnl|Prokka|COEODNAD_129); c00085_gnlPro.. (original name was: gnl|Prokka|COEODNAD_131); c00086_gnlPro.. (original name was: gnl|Prokka|COEODNAD_133); c00087_gnlPro.. (original name was: gnl|Prokka|COEODNAD_137); c00088_gnlPro.. (original name was: gnl|Prokka|COEODNAD_139); c00089_gnlPro.. (original name was: gnl|Prokka|COEODNAD_140); c00090_gnlPro.. (original name was: gnl|Prokka|COEODNAD_141); c00091_gnlPro.. (original name was: gnl|Prokka|COEODNAD_142); c00092_gnlPro.. (original name was: gnl|Prokka|COEODNAD_143); c00093_gnlPro.. (original name was: gnl|Prokka|COEODNAD_144); c00094_gnlPro.. (original name was: gnl|Prokka|COEODNAD_145); c00095_gnlPro.. (original name was: gnl|Prokka|COEODNAD_147); c00096_gnlPro.. (original name was: gnl|Prokka|COEODNAD_148); c00097_gnlPro.. (original name was: gnl|Prokka|COEODNAD_149); c00098_gnlPro.. (original name was: gnl|Prokka|COEODNAD_150); c00100_gnlPro.. (original name was: gnl|Prokka|COEODNAD_154); c00101_gnlPro.. (original name was: gnl|Prokka|COEODNAD_155); c00102_gnlPro.. (original name was: gnl|Prokka|COEODNAD_157); c00103_gnlPro.. (original name was: gnl|Prokka|COEODNAD_164); c00104_gnlPro.. (original name was: gnl|Prokka|COEODNAD_166); c00105_gnlPro.. (original name was: gnl|Prokka|COEODNAD_167); c00106_gnlPro.. (original name was: gnl|Prokka|COEODNAD_168); c00107_gnlPro.. (original name was: gnl|Prokka|COEODNAD_169); c00108_gnlPro.. (original name was: gnl|Prokka|COEODNAD_170); c00110_gnlPro.. (original name was: gnl|Prokka|COEODNAD_172); c00111_gnlPro.. (original name was: gnl|Prokka|COEODNAD_173); c00112_gnlPro.. (original name was: gnl|Prokka|COEODNAD_174); c00113_gnlPro.. (original name was: gnl|Prokka|COEODNAD_177); c00114_gnlPro.. (original name was: gnl|Prokka|COEODNAD_178); c00116_gnlPro.. (original name was: gnl|Prokka|COEODNAD_180); c00117_gnlPro.. (original name was: gnl|Prokka|COEODNAD_181); c00118_gnlPro.. (original name was: gnl|Prokka|COEODNAD_182); c00119_gnlPro.. (original name was: gnl|Prokka|COEODNAD_183); c00120_gnlPro.. (original name was: gnl|Prokka|COEODNAD_186); c00121_gnlPro.. (original name was: gnl|Prokka|COEODNAD_188); c00122_gnlPro.. (original name was: gnl|Prokka|COEODNAD_190); c00123_gnlPro.. (original name was: gnl|Prokka|COEODNAD_191); c00124_gnlPro.. (original name was: gnl|Prokka|COEODNAD_193); c00125_gnlPro.. (original name was: gnl|Prokka|COEODNAD_195); c00126_gnlPro.. (original name was: gnl|Prokka|COEODNAD_196); c00127_gnlPro.. (original name was: gnl|Prokka|COEODNAD_197); c00128_gnlPro.. (original name was: gnl|Prokka|COEODNAD_198); c00129_gnlPro.. (original name was: gnl|Prokka|COEODNAD_199); c00130_gnlPro.. (original name was: gnl|Prokka|COEODNAD_201); c00131_gnlPro.. (original name was: gnl|Prokka|COEODNAD_202); c00132_gnlPro.. (original name was: gnl|Prokka|COEODNAD_203); c00133_gnlPro.. (original name was: gnl|Prokka|COEODNAD_204); c00134_gnlPro.. (original name was: gnl|Prokka|COEODNAD_205); c00135_gnlPro.. (original name was: gnl|Prokka|COEODNAD_206); c00136_gnlPro.. (original name was: gnl|Prokka|COEODNAD_207); c00137_gnlPro.. (original name was: gnl|Prokka|COEODNAD_210); c00138_gnlPro.. (original name was: gnl|Prokka|COEODNAD_213); c00139_gnlPro.. (original name was: gnl|Prokka|COEODNAD_214); c00140_gnlPro.. (original name was: gnl|Prokka|COEODNAD_216); c00141_gnlPro.. (original name was: gnl|Prokka|COEODNAD_217); c00142_gnlPro.. (original name was: gnl|Prokka|COEODNAD_218); c00143_gnlPro.. (original name was: gnl|Prokka|COEODNAD_219); c00144_gnlPro.. (original name was: gnl|Prokka|COEODNAD_220); c00145_gnlPro.. (original name was: gnl|Prokka|COEODNAD_221); c00146_gnlPro.. (original name was: gnl|Prokka|COEODNAD_223); c00147_gnlPro.. (original name was: gnl|Prokka|COEODNAD_224); c00148_gnlPro.. (original name was: gnl|Prokka|COEODNAD_225); c00149_gnlPro.. (original name was: gnl|Prokka|COEODNAD_226); c00150_gnlPro.. (original name was: gnl|Prokka|COEODNAD_227); c00151_gnlPro.. (original name was: gnl|Prokka|COEODNAD_228); c00152_gnlPro.. (original name was: gnl|Prokka|COEODNAD_229); c00153_gnlPro.. (original name was: gnl|Prokka|COEODNAD_230); c00154_gnlPro.. (original name was: gnl|Prokka|COEODNAD_231); c00155_gnlPro.. (original name was: gnl|Prokka|COEODNAD_232); c00156_gnlPro.. (original name was: gnl|Prokka|COEODNAD_233); c00157_gnlPro.. (original name was: gnl|Prokka|COEODNAD_235); c00158_gnlPro.. (original name was: gnl|Prokka|COEODNAD_236); c00159_gnlPro.. (original name was: gnl|Prokka|COEODNAD_238); c00160_gnlPro.. (original name was: gnl|Prokka|COEODNAD_239); c00161_gnlPro.. (original name was: gnl|Prokka|COEODNAD_240); c00162_gnlPro.. (original name was: gnl|Prokka|COEODNAD_244); c00163_gnlPro.. (original name was: gnl|Prokka|COEODNAD_245); c00164_gnlPro.. (original name was: gnl|Prokka|COEODNAD_246); c00165_gnlPro.. (original name was: gnl|Prokka|COEODNAD_247); c00166_gnlPro.. (original name was: gnl|Prokka|COEODNAD_248); c00167_gnlPro.. (original name was: gnl|Prokka|COEODNAD_249); c00168_gnlPro.. (original name was: gnl|Prokka|COEODNAD_250); c00169_gnlPro.. (original name was: gnl|Prokka|COEODNAD_251); c00170_gnlPro.. (original name was: gnl|Prokka|COEODNAD_254); c00171_gnlPro.. (original name was: gnl|Prokka|COEODNAD_255); c00172_gnlPro.. (original name was: gnl|Prokka|COEODNAD_256); c00173_gnlPro.. (original name was: gnl|Prokka|COEODNAD_257); c00174_gnlPro.. (original name was: gnl|Prokka|COEODNAD_258); c00175_gnlPro.. (original name was: gnl|Prokka|COEODNAD_259); c00176_gnlPro.. (original name was: gnl|Prokka|COEODNAD_260); c00177_gnlPro.. (original name was: gnl|Prokka|COEODNAD_261); c00178_gnlPro.. (original name was: gnl|Prokka|COEODNAD_263); c00179_gnlPro.. (original name was: gnl|Prokka|COEODNAD_264); c00180_gnlPro.. (original name was: gnl|Prokka|COEODNAD_265); c00181_gnlPro.. (original name was: gnl|Prokka|COEODNAD_266); c00182_gnlPro.. (original name was: gnl|Prokka|COEODNAD_267); c00183_gnlPro.. (original name was: gnl|Prokka|COEODNAD_268); c00184_gnlPro.. (original name was: gnl|Prokka|COEODNAD_269); c00185_gnlPro.. (original name was: gnl|Prokka|COEODNAD_271); c00186_gnlPro.. (original name was: gnl|Prokka|COEODNAD_273); c00187_gnlPro.. (original name was: gnl|Prokka|COEODNAD_274); c00188_gnlPro.. (original name was: gnl|Prokka|COEODNAD_275); c00189_gnlPro.. (original name was: gnl|Prokka|COEODNAD_276); c00190_gnlPro.. (original name was: gnl|Prokka|COEODNAD_277); c00191_gnlPro.. (original name was: gnl|Prokka|COEODNAD_279); c00192_gnlPro.. (original name was: gnl|Prokka|COEODNAD_280); c00193_gnlPro.. (original name was: gnl|Prokka|COEODNAD_281); c00194_gnlPro.. (original name was: gnl|Prokka|COEODNAD_282); c00195_gnlPro.. (original name was: gnl|Prokka|COEODNAD_284); c00196_gnlPro.. (original name was: gnl|Prokka|COEODNAD_286); c00197_gnlPro.. (original name was: gnl|Prokka|COEODNAD_287); c00198_gnlPro.. (original name was: gnl|Prokka|COEODNAD_288); c00200_gnlPro.. (original name was: gnl|Prokka|COEODNAD_290); c00201_gnlPro.. (original name was: gnl|Prokka|COEODNAD_291); c00202_gnlPro.. (original name was: gnl|Prokka|COEODNAD_292); c00203_gnlPro.. (original name was: gnl|Prokka|COEODNAD_296); c00204_gnlPro.. (original name was: gnl|Prokka|COEODNAD_297); c00205_gnlPro.. (original name was: gnl|Prokka|COEODNAD_298); c00206_gnlPro.. (original name was: gnl|Prokka|COEODNAD_299); c00207_gnlPro.. (original name was: gnl|Prokka|COEODNAD_301); c00208_gnlPro.. (original name was: gnl|Prokka|COEODNAD_302); c00209_gnlPro.. (original name was: gnl|Prokka|COEODNAD_303); c00210_gnlPro.. (original name was: gnl|Prokka|COEODNAD_305); c00211_gnlPro.. (original name was: gnl|Prokka|COEODNAD_306); c00212_gnlPro.. (original name was: gnl|Prokka|COEODNAD_308); c00213_gnlPro.. (original name was: gnl|Prokka|COEODNAD_310); c00214_gnlPro.. (original name was: gnl|Prokka|COEODNAD_311); c00215_gnlPro.. (original name was: gnl|Prokka|COEODNAD_313); c00216_gnlPro.. (original name was: gnl|Prokka|COEODNAD_315); c00217_gnlPro.. (original name was: gnl|Prokka|COEODNAD_317); c00218_gnlPro.. (original name was: gnl|Prokka|COEODNAD_319); c00219_gnlPro.. (original name was: gnl|Prokka|COEODNAD_320); c00220_gnlPro.. (original name was: gnl|Prokka|COEODNAD_323); c00221_gnlPro.. (original name was: gnl|Prokka|COEODNAD_325); c00222_gnlPro.. (original name was: gnl|Prokka|COEODNAD_326); c00223_gnlPro.. (original name was: gnl|Prokka|COEODNAD_328); c00224_gnlPro.. (original name was: gnl|Prokka|COEODNAD_330); c00225_gnlPro.. (original name was: gnl|Prokka|COEODNAD_331); c00226_gnlPro.. (original name was: gnl|Prokka|COEODNAD_332); c00227_gnlPro.. (original name was: gnl|Prokka|COEODNAD_333); c00228_gnlPro.. (original name was: gnl|Prokka|COEODNAD_334); c00229_gnlPro.. (original name was: gnl|Prokka|COEODNAD_335); c00230_gnlPro.. (original name was: gnl|Prokka|COEODNAD_336); c00231_gnlPro.. (original name was: gnl|Prokka|COEODNAD_337); c00232_gnlPro.. (original name was: gnl|Prokka|COEODNAD_338); c00233_gnlPro.. (original name was: gnl|Prokka|COEODNAD_339); c00234_gnlPro.. (original name was: gnl|Prokka|COEODNAD_341); c00235_gnlPro.. (original name was: gnl|Prokka|COEODNAD_342); c00236_gnlPro.. (original name was: gnl|Prokka|COEODNAD_343); c00237_gnlPro.. (original name was: gnl|Prokka|COEODNAD_344); c00238_gnlPro.. (original name was: gnl|Prokka|COEODNAD_347); c00239_gnlPro.. (original name was: gnl|Prokka|COEODNAD_348); c00240_gnlPro.. (original name was: gnl|Prokka|COEODNAD_349); c00241_gnlPro.. (original name was: gnl|Prokka|COEODNAD_350); c00242_gnlPro.. (original name was: gnl|Prokka|COEODNAD_352); c00243_gnlPro.. (original name was: gnl|Prokka|COEODNAD_353); c00244_gnlPro.. (original name was: gnl|Prokka|COEODNAD_356); c00245_gnlPro.. (original name was: gnl|Prokka|COEODNAD_357); c00246_gnlPro.. (original name was: gnl|Prokka|COEODNAD_358); c00247_gnlPro.. (original name was: gnl|Prokka|COEODNAD_359); c00248_gnlPro.. (original name was: gnl|Prokka|COEODNAD_360); c00249_gnlPro.. (original name was: gnl|Prokka|COEODNAD_361); c00250_gnlPro.. (original name was: gnl|Prokka|COEODNAD_363); c00251_gnlPro.. (original name was: gnl|Prokka|COEODNAD_365); c00252_gnlPro.. (original name was: gnl|Prokka|COEODNAD_366); c00253_gnlPro.. (original name was: gnl|Prokka|COEODNAD_368); c00254_gnlPro.. (original name was: gnl|Prokka|COEODNAD_369)

Compact view

c00019_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 4,397 - 27,951 nt. (total: 23,555 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00019_gnlPro.. - Region 2 - succinate2propionate

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Location: 68,536 - 93,174 nt. (total: 24,639 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00044_gnlPro.. - Region 1 - NADH_dehydrogenase_I

Download region GenBank file

Location: 19,509 - 47,996 nt. (total: 28,488 nt) Show pHMM detection rules used

Region on contig edge.

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00062_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 7,856 - 31,314 nt. (total: 23,459 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00099_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 13,256 nt. (total: 13,256 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00099_gnlPro.. - Region 2 - TPP_fatty_acids

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Location: 15,949 - 41,824 nt. (total: 25,876 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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c00109_gnlPro.. - Region 1 - porA

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Location: 1 - 21,886 nt. (total: 21,886 nt) Show pHMM detection rules used

Region on contig edge.

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00115_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 58,952 - 85,552 nt. (total: 26,601 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00199_gnlPro.. - Region 1 - Rnf_complex

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Location: 1 - 16,281 nt. (total: 16,281 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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