GCA_001406135.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaAGFLLODB_1 (original name was: gnl|Prokka|AGFLLODB_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RRE-containing	505,924	526,190

gnlProkkaAGFLLODB_6 (original name was: gnl|Prokka|AGFLLODB_6)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	RRE-containing	77,993	98,346

gnlProkkaAGFLLODB_8 (original name was: gnl|Prokka|AGFLLODB_8)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	thiopeptide	248,033	274,354

gnlProkkaAGFLLODB_14 (original name was: gnl|Prokka|AGFLLODB_14)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	resorcinol	55,271	96,410

Region	Type	From	To	Similarity
Region 1.1	RRE-containing	505,924	526,190
Region 6.1	RRE-containing	77,993	98,346
Region 8.1	thiopeptide	248,033	274,354
Region 14.1	resorcinol	55,271	96,410

No secondary metabolite regions were found in these records:: gnlProkkaAGFLLODB_2 (original name was: gnl|Prokka|AGFLLODB_2); gnlProkkaAGFLLODB_3 (original name was: gnl|Prokka|AGFLLODB_3); gnlProkkaAGFLLODB_4 (original name was: gnl|Prokka|AGFLLODB_4); gnlProkkaAGFLLODB_5 (original name was: gnl|Prokka|AGFLLODB_5); gnlProkkaAGFLLODB_7 (original name was: gnl|Prokka|AGFLLODB_7); gnlProkkaAGFLLODB_9 (original name was: gnl|Prokka|AGFLLODB_9); gnlProkkaAGFLLODB_10 (original name was: gnl|Prokka|AGFLLODB_10); gnlProkkaAGFLLODB_11 (original name was: gnl|Prokka|AGFLLODB_11); gnlProkkaAGFLLODB_12 (original name was: gnl|Prokka|AGFLLODB_12); gnlProkkaAGFLLODB_13 (original name was: gnl|Prokka|AGFLLODB_13); gnlProkkaAGFLLODB_15 (original name was: gnl|Prokka|AGFLLODB_15); gnlProkkaAGFLLODB_16 (original name was: gnl|Prokka|AGFLLODB_16); gnlProkkaAGFLLODB_17 (original name was: gnl|Prokka|AGFLLODB_17); gnlProkkaAGFLLODB_18 (original name was: gnl|Prokka|AGFLLODB_18); gnlProkkaAGFLLODB_19 (original name was: gnl|Prokka|AGFLLODB_19); gnlProkkaAGFLLODB_20 (original name was: gnl|Prokka|AGFLLODB_20)

Compact view

gnlProkkaAGFLLODB_1 - Region 1 - RRE-containing

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Location: 505,924 - 526,190 nt. (total: 20,267 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaAGFLLODB_6 - Region 1 - RRE-containing

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Location: 77,993 - 98,346 nt. (total: 20,354 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaAGFLLODB_8 - Region 1 - thiopeptide

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Location: 248,033 - 274,354 nt. (total: 26,322 nt) Show pHMM detection rules used

thiopeptide: ((YcaO or TIGR03604) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Thiopeptides

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Thiopeptide predictions

No core peptides found.

Thiopeptides

Core peptide predictions

No core peptides found.

gnlProkkaAGFLLODB_14 - Region 1 - resorcinol

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Location: 55,271 - 96,410 nt. (total: 41,140 nt) Show pHMM detection rules used

resorcinol: DarB

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.