GCA_001406155.1 - 7 region(s)

Identified primary metabolite regions

c00005_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_5)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Rnf_complex	E-MGC	95,221	112,680	Rnf complex C. sporogenes	RNF	100%

c00007_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_7)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	OD_AA_metabolism	Putative	84,723	108,085	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00013_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_13)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	Others_HGD_unassigned	Putative	72,966	87,369

c00036_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_36)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 36.1	Pyruvate2acetate-formate	SCFA	1	15,400	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00037_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_37)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 37.1	pdu	SCFA-other	5,270	33,921	Propanediol degradation S. enterica	PDU	50%

c00039_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_39)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 39.1	acetate2butyrate	SCFA	1	17,501	Acetate to butyrate C. sporogenes	BUT	100%

c00040_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_40)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 40.1	succinate2propionate	SCFA	1,294	26,266	Succinate to propionate B. theta	PRO	25%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_1); c00002_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_2); c00003_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_3); c00004_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_4); c00006_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_6); c00008_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_8); c00009_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_9); c00010_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_10); c00011_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_11); c00012_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_12); c00014_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_14); c00015_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_15); c00016_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_16); c00017_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_17); c00018_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_18); c00019_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_19); c00020_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_20); c00021_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_21); c00022_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_22); c00023_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_23); c00024_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_24); c00025_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_25); c00026_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_26); c00027_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_27); c00028_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_28); c00029_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_29); c00030_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_30); c00031_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_31); c00032_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_32); c00033_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_33); c00034_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_34); c00035_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_35); c00038_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_38); c00041_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_41); c00042_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_42); c00043_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_43); c00044_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_44); c00045_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_45); c00046_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_46); c00047_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_47); c00048_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_48); c00049_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_49); c00050_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_50); c00051_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_51); c00052_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_52); c00053_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_53); c00054_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_54); c00055_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_55); c00056_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_56); c00057_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_57); c00058_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_58); c00059_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_59); c00060_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_60); c00061_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_61); c00062_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_62); c00063_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_63); c00064_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_64); c00065_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_65); c00066_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_66); c00067_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_67); c00068_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_68); c00069_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_69); c00070_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_70); c00071_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_71); c00072_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_72); c00073_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_73); c00074_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_74); c00075_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_75); c00076_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_76); c00077_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_77); c00078_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_78); c00079_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_79); c00080_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_80); c00081_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_81); c00082_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_82); c00083_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_83); c00084_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_84); c00085_gnlPro.. (original name was: gnl|Prokka|FIFKLJOA_85)

Compact view

c00005_gnlPro.. - Region 1 - Rnf_complex

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Location: 95,221 - 112,680 nt. (total: 17,460 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00007_gnlPro.. - Region 1 - OD_AA_metabolism

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Location: 84,723 - 108,085 nt. (total: 23,363 nt) Show pHMM detection rules used

Region on contig edge.

OD_AA_metabolism: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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c00013_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 72,966 - 87,369 nt. (total: 14,404 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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core biosynthetic genes

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No matches found.

c00036_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 15,400 nt. (total: 15,400 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00037_gnlPro.. - Region 1 - pdu

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Location: 5,270 - 33,921 nt. (total: 28,652 nt) Show pHMM detection rules used

Region on contig edge.

pdu: (minimum(2, [Aldedh, BMC, Cob_adeno_trans, EutN_CcmL, Fe-ADH, Fe-ADH_2, PDU_like, PTAC, PduV-EutP]) and Dehydratase_MU and Dehydratase_SU and Dehydratase_LU)

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c00039_gnlPro.. - Region 1 - acetate2butyrate

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Location: 1 - 17,501 nt. (total: 17,501 nt) Show pHMM detection rules used

Region on contig edge.

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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c00040_gnlPro.. - Region 1 - succinate2propionate

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Location: 1,294 - 26,266 nt. (total: 24,973 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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