GCA_001406435.1 - 14 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaFPDEOCMN_1 (original name was: gnl|Prokka|FPDEOCMN_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	cyclic-lactone-autoinducer	196,060	216,808

gnlProkkaFPDEOCMN_9 (original name was: gnl|Prokka|FPDEOCMN_9)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	ranthipeptide	11,561	33,409

gnlProkkaFPDEOCMN_12 (original name was: gnl|Prokka|FPDEOCMN_12)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	RRE-containing	86,948	107,199

gnlProkkaFPDEOCMN_14 (original name was: gnl|Prokka|FPDEOCMN_14)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	cyclic-lactone-autoinducer	1	14,310

gnlProkkaFPDEOCMN_21 (original name was: gnl|Prokka|FPDEOCMN_21)

Region	Type	From	To	Most similar known cluster		Similarity
Region 21.1	cyclic-lactone-autoinducer	63,643	85,186

gnlProkkaFPDEOCMN_30 (original name was: gnl|Prokka|FPDEOCMN_30)

Region	Type	From	To	Most similar known cluster		Similarity
Region 30.1	phosphonate	1,121	25,616	polysaccharide B	Saccharide	13%

gnlProkkaFPDEOCMN_31 (original name was: gnl|Prokka|FPDEOCMN_31)

Region	Type	From	To	Most similar known cluster		Similarity
Region 31.1	ranthipeptide	1	21,020

gnlProkkaFPDEOCMN_40 (original name was: gnl|Prokka|FPDEOCMN_40)

Region	Type	From	To	Most similar known cluster		Similarity
Region 40.1	cyclic-lactone-autoinducer	1	14,759

gnlProkkaFPDEOCMN_52 (original name was: gnl|Prokka|FPDEOCMN_52)

Region	Type	From	To	Most similar known cluster		Similarity
Region 52.1	cyclic-lactone-autoinducer	1	10,379

gnlProkkaFPDEOCMN_57 (original name was: gnl|Prokka|FPDEOCMN_57)

Region	Type	From	To	Most similar known cluster		Similarity
Region 57.1	ranthipeptide	1	9,937

gnlProkkaFPDEOCMN_62 (original name was: gnl|Prokka|FPDEOCMN_62)

Region	Type	From	To	Most similar known cluster		Similarity
Region 62.1	RRE-containing	1	6,186

gnlProkkaFPDEOCMN_68 (original name was: gnl|Prokka|FPDEOCMN_68)

Region	Type	From	To	Most similar known cluster		Similarity
Region 68.1	cyclic-lactone-autoinducer	1	4,407

gnlProkkaFPDEOCMN_78 (original name was: gnl|Prokka|FPDEOCMN_78)

Region	Type	From	To	Most similar known cluster		Similarity
Region 78.1	cyclic-lactone-autoinducer	1	3,180

gnlProkkaFPDEOCMN_86 (original name was: gnl|Prokka|FPDEOCMN_86)

Region	Type	From	To	Most similar known cluster		Similarity
Region 86.1	cyclic-lactone-autoinducer	1	1,509

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	cyclic-lactone-autoinducer	196,060	216,808
Region 9.1	ranthipeptide	11,561	33,409
Region 12.1	RRE-containing	86,948	107,199
Region 14.1	cyclic-lactone-autoinducer	1	14,310
Region 21.1	cyclic-lactone-autoinducer	63,643	85,186
Region 30.1	phosphonate	1,121	25,616	polysaccharide B	Saccharide	13%
Region 31.1	ranthipeptide	1	21,020
Region 40.1	cyclic-lactone-autoinducer	1	14,759
Region 52.1	cyclic-lactone-autoinducer	1	10,379
Region 57.1	ranthipeptide	1	9,937
Region 62.1	RRE-containing	1	6,186
Region 68.1	cyclic-lactone-autoinducer	1	4,407
Region 78.1	cyclic-lactone-autoinducer	1	3,180
Region 86.1	cyclic-lactone-autoinducer	1	1,509

Compact view

gnlProkkaFPDEOCMN_1 - Region 1 - cyclic-lactone-autoinducer

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Location: 196,060 - 216,808 nt. (total: 20,749 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

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core biosynthetic genes

additional biosynthetic genes

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaFPDEOCMN_9 - Region 1 - ranthipeptide

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Location: 11,561 - 33,409 nt. (total: 21,849 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or (YcaO or TIGR03604))))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

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gnlProkkaFPDEOCMN_12 - Region 1 - RRE-containing

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Location: 86,948 - 107,199 nt. (total: 20,252 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaFPDEOCMN_14 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 14,310 nt. (total: 14,310 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

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gnlProkkaFPDEOCMN_21 - Region 1 - cyclic-lactone-autoinducer

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Location: 63,643 - 85,186 nt. (total: 21,544 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

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gnlProkkaFPDEOCMN_30 - Region 1 - phosphonate

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Location: 1,121 - 25,616 nt. (total: 24,496 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

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core biosynthetic genes

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transport-related genes

regulatory genes

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gnlProkkaFPDEOCMN_31 - Region 1 - ranthipeptide

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Location: 1 - 21,020 nt. (total: 21,020 nt) Show pHMM detection rules used

Region on contig edge.

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or (YcaO or TIGR03604))))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
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gnlProkkaFPDEOCMN_40 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 14,759 nt. (total: 14,759 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

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No matches found.

gnlProkkaFPDEOCMN_52 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 10,379 nt. (total: 10,379 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

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gnlProkkaFPDEOCMN_57 - Region 1 - ranthipeptide

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Location: 1 - 9,937 nt. (total: 9,937 nt) Show pHMM detection rules used

Region on contig edge.

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or (YcaO or TIGR03604))))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
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gnlProkkaFPDEOCMN_62 - Region 1 - RRE-containing

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Location: 1 - 6,186 nt. (total: 6,186 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

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No matches found.

gnlProkkaFPDEOCMN_68 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 4,407 nt. (total: 4,407 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaFPDEOCMN_78 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 3,180 nt. (total: 3,180 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

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No matches found.

gnlProkkaFPDEOCMN_86 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 1,509 nt. (total: 1,509 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

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No matches found.