GCA_001535615.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaJPAADKMP_9 (original name was: gnl|Prokka|JPAADKMP_9)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	RRE-containing	1	15,226

gnlProkkaJPAADKMP_29 (original name was: gnl|Prokka|JPAADKMP_29)

Region	Type	From	To	Most similar known cluster		Similarity
Region 29.1	arylpolyene	1	45,899	flexirubin	Other	48%

No secondary metabolite regions were found in these records:: gnlProkkaJPAADKMP_1 (original name was: gnl|Prokka|JPAADKMP_1); gnlProkkaJPAADKMP_2 (original name was: gnl|Prokka|JPAADKMP_2); gnlProkkaJPAADKMP_3 (original name was: gnl|Prokka|JPAADKMP_3); gnlProkkaJPAADKMP_4 (original name was: gnl|Prokka|JPAADKMP_4); gnlProkkaJPAADKMP_5 (original name was: gnl|Prokka|JPAADKMP_5); gnlProkkaJPAADKMP_6 (original name was: gnl|Prokka|JPAADKMP_6); gnlProkkaJPAADKMP_7 (original name was: gnl|Prokka|JPAADKMP_7); gnlProkkaJPAADKMP_8 (original name was: gnl|Prokka|JPAADKMP_8); gnlProkkaJPAADKMP_10 (original name was: gnl|Prokka|JPAADKMP_10); gnlProkkaJPAADKMP_11 (original name was: gnl|Prokka|JPAADKMP_11); gnlProkkaJPAADKMP_12 (original name was: gnl|Prokka|JPAADKMP_12); gnlProkkaJPAADKMP_13 (original name was: gnl|Prokka|JPAADKMP_13); gnlProkkaJPAADKMP_14 (original name was: gnl|Prokka|JPAADKMP_14); gnlProkkaJPAADKMP_15 (original name was: gnl|Prokka|JPAADKMP_15); gnlProkkaJPAADKMP_16 (original name was: gnl|Prokka|JPAADKMP_16); gnlProkkaJPAADKMP_17 (original name was: gnl|Prokka|JPAADKMP_17); gnlProkkaJPAADKMP_18 (original name was: gnl|Prokka|JPAADKMP_18); gnlProkkaJPAADKMP_19 (original name was: gnl|Prokka|JPAADKMP_19); gnlProkkaJPAADKMP_20 (original name was: gnl|Prokka|JPAADKMP_20); gnlProkkaJPAADKMP_21 (original name was: gnl|Prokka|JPAADKMP_21); gnlProkkaJPAADKMP_22 (original name was: gnl|Prokka|JPAADKMP_22); gnlProkkaJPAADKMP_23 (original name was: gnl|Prokka|JPAADKMP_23); gnlProkkaJPAADKMP_24 (original name was: gnl|Prokka|JPAADKMP_24); gnlProkkaJPAADKMP_25 (original name was: gnl|Prokka|JPAADKMP_25); gnlProkkaJPAADKMP_26 (original name was: gnl|Prokka|JPAADKMP_26); gnlProkkaJPAADKMP_27 (original name was: gnl|Prokka|JPAADKMP_27); gnlProkkaJPAADKMP_28 (original name was: gnl|Prokka|JPAADKMP_28); gnlProkkaJPAADKMP_30 (original name was: gnl|Prokka|JPAADKMP_30); gnlProkkaJPAADKMP_31 (original name was: gnl|Prokka|JPAADKMP_31); gnlProkkaJPAADKMP_32 (original name was: gnl|Prokka|JPAADKMP_32); gnlProkkaJPAADKMP_33 (original name was: gnl|Prokka|JPAADKMP_33); gnlProkkaJPAADKMP_34 (original name was: gnl|Prokka|JPAADKMP_34); gnlProkkaJPAADKMP_35 (original name was: gnl|Prokka|JPAADKMP_35); gnlProkkaJPAADKMP_36 (original name was: gnl|Prokka|JPAADKMP_36); gnlProkkaJPAADKMP_37 (original name was: gnl|Prokka|JPAADKMP_37); gnlProkkaJPAADKMP_38 (original name was: gnl|Prokka|JPAADKMP_38); gnlProkkaJPAADKMP_39 (original name was: gnl|Prokka|JPAADKMP_39); gnlProkkaJPAADKMP_40 (original name was: gnl|Prokka|JPAADKMP_40); gnlProkkaJPAADKMP_41 (original name was: gnl|Prokka|JPAADKMP_41); gnlProkkaJPAADKMP_42 (original name was: gnl|Prokka|JPAADKMP_42); gnlProkkaJPAADKMP_43 (original name was: gnl|Prokka|JPAADKMP_43); gnlProkkaJPAADKMP_44 (original name was: gnl|Prokka|JPAADKMP_44); gnlProkkaJPAADKMP_45 (original name was: gnl|Prokka|JPAADKMP_45); gnlProkkaJPAADKMP_46 (original name was: gnl|Prokka|JPAADKMP_46); gnlProkkaJPAADKMP_47 (original name was: gnl|Prokka|JPAADKMP_47); gnlProkkaJPAADKMP_48 (original name was: gnl|Prokka|JPAADKMP_48); gnlProkkaJPAADKMP_49 (original name was: gnl|Prokka|JPAADKMP_49); gnlProkkaJPAADKMP_50 (original name was: gnl|Prokka|JPAADKMP_50); gnlProkkaJPAADKMP_51 (original name was: gnl|Prokka|JPAADKMP_51); gnlProkkaJPAADKMP_52 (original name was: gnl|Prokka|JPAADKMP_52); gnlProkkaJPAADKMP_53 (original name was: gnl|Prokka|JPAADKMP_53); gnlProkkaJPAADKMP_54 (original name was: gnl|Prokka|JPAADKMP_54); gnlProkkaJPAADKMP_55 (original name was: gnl|Prokka|JPAADKMP_55); gnlProkkaJPAADKMP_56 (original name was: gnl|Prokka|JPAADKMP_56); gnlProkkaJPAADKMP_57 (original name was: gnl|Prokka|JPAADKMP_57); gnlProkkaJPAADKMP_58 (original name was: gnl|Prokka|JPAADKMP_58); gnlProkkaJPAADKMP_59 (original name was: gnl|Prokka|JPAADKMP_59); gnlProkkaJPAADKMP_60 (original name was: gnl|Prokka|JPAADKMP_60); gnlProkkaJPAADKMP_61 (original name was: gnl|Prokka|JPAADKMP_61); gnlProkkaJPAADKMP_62 (original name was: gnl|Prokka|JPAADKMP_62); gnlProkkaJPAADKMP_63 (original name was: gnl|Prokka|JPAADKMP_63); gnlProkkaJPAADKMP_64 (original name was: gnl|Prokka|JPAADKMP_64); gnlProkkaJPAADKMP_65 (original name was: gnl|Prokka|JPAADKMP_65); gnlProkkaJPAADKMP_66 (original name was: gnl|Prokka|JPAADKMP_66); gnlProkkaJPAADKMP_67 (original name was: gnl|Prokka|JPAADKMP_67); gnlProkkaJPAADKMP_68 (original name was: gnl|Prokka|JPAADKMP_68); gnlProkkaJPAADKMP_69 (original name was: gnl|Prokka|JPAADKMP_69); gnlProkkaJPAADKMP_70 (original name was: gnl|Prokka|JPAADKMP_70); gnlProkkaJPAADKMP_71 (original name was: gnl|Prokka|JPAADKMP_71); gnlProkkaJPAADKMP_72 (original name was: gnl|Prokka|JPAADKMP_72); gnlProkkaJPAADKMP_73 (original name was: gnl|Prokka|JPAADKMP_73); gnlProkkaJPAADKMP_74 (original name was: gnl|Prokka|JPAADKMP_74); gnlProkkaJPAADKMP_75 (original name was: gnl|Prokka|JPAADKMP_75); gnlProkkaJPAADKMP_76 (original name was: gnl|Prokka|JPAADKMP_76); gnlProkkaJPAADKMP_77 (original name was: gnl|Prokka|JPAADKMP_77); gnlProkkaJPAADKMP_78 (original name was: gnl|Prokka|JPAADKMP_78); gnlProkkaJPAADKMP_79 (original name was: gnl|Prokka|JPAADKMP_79); gnlProkkaJPAADKMP_80 (original name was: gnl|Prokka|JPAADKMP_80); gnlProkkaJPAADKMP_81 (original name was: gnl|Prokka|JPAADKMP_81); gnlProkkaJPAADKMP_82 (original name was: gnl|Prokka|JPAADKMP_82); gnlProkkaJPAADKMP_83 (original name was: gnl|Prokka|JPAADKMP_83); gnlProkkaJPAADKMP_84 (original name was: gnl|Prokka|JPAADKMP_84); gnlProkkaJPAADKMP_85 (original name was: gnl|Prokka|JPAADKMP_85); gnlProkkaJPAADKMP_86 (original name was: gnl|Prokka|JPAADKMP_86); gnlProkkaJPAADKMP_87 (original name was: gnl|Prokka|JPAADKMP_87); gnlProkkaJPAADKMP_88 (original name was: gnl|Prokka|JPAADKMP_88); gnlProkkaJPAADKMP_89 (original name was: gnl|Prokka|JPAADKMP_89); gnlProkkaJPAADKMP_90 (original name was: gnl|Prokka|JPAADKMP_90); gnlProkkaJPAADKMP_91 (original name was: gnl|Prokka|JPAADKMP_91); gnlProkkaJPAADKMP_92 (original name was: gnl|Prokka|JPAADKMP_92); gnlProkkaJPAADKMP_93 (original name was: gnl|Prokka|JPAADKMP_93); gnlProkkaJPAADKMP_94 (original name was: gnl|Prokka|JPAADKMP_94); gnlProkkaJPAADKMP_95 (original name was: gnl|Prokka|JPAADKMP_95); gnlProkkaJPAADKMP_96 (original name was: gnl|Prokka|JPAADKMP_96); gnlProkkaJPAADKMP_97 (original name was: gnl|Prokka|JPAADKMP_97); gnlProkkaJPAADKMP_98 (original name was: gnl|Prokka|JPAADKMP_98); gnlProkkaJPAADKMP_99 (original name was: gnl|Prokka|JPAADKMP_99); gnlProkkaJPAADKMP_100 (original name was: gnl|Prokka|JPAADKMP_100); gnlProkkaJPAADKMP_101 (original name was: gnl|Prokka|JPAADKMP_101); gnlProkkaJPAADKMP_102 (original name was: gnl|Prokka|JPAADKMP_102); gnlProkkaJPAADKMP_103 (original name was: gnl|Prokka|JPAADKMP_103); gnlProkkaJPAADKMP_104 (original name was: gnl|Prokka|JPAADKMP_104); gnlProkkaJPAADKMP_105 (original name was: gnl|Prokka|JPAADKMP_105); gnlProkkaJPAADKMP_106 (original name was: gnl|Prokka|JPAADKMP_106)

Compact view

gnlProkkaJPAADKMP_9 - Region 1 - RRE-containing

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Location: 1 - 15,226 nt. (total: 15,226 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJPAADKMP_29 - Region 1 - arylpolyene

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Location: 1 - 45,899 nt. (total: 45,899 nt) Show pHMM detection rules used

Region on contig edge.

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg29_33

AMP-binding (18..335): X

nrpys: Asp, Asn, Glu, Gln, Aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: YMRMIITSSK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)