GCA_001633385.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaHCHIIPNP_11 (original name was: gnl|Prokka|HCHIIPNP_11)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	RiPP-like	336,564	348,714

gnlProkkaHCHIIPNP_26 (original name was: gnl|Prokka|HCHIIPNP_26)

Region	Type	From	To	Most similar known cluster		Similarity
Region 16.1	cyclic-lactone-autoinducer	227,450	248,155

gnlProkkaHCHIIPNP_28 (original name was: gnl|Prokka|HCHIIPNP_28)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	T3PKS	78,350	119,519

gnlProkkaHCHIIPNP_30 (original name was: gnl|Prokka|HCHIIPNP_30)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	terpene	77,205	92,815

Region	Type	From	To	Similarity
Region 11.1	RiPP-like	336,564	348,714
Region 16.1	cyclic-lactone-autoinducer	227,450	248,155
Region 18.1	T3PKS	78,350	119,519
Region 20.1	terpene	77,205	92,815

No secondary metabolite regions were found in these records:: gnlProkkaHCHIIPNP_1 (original name was: gnl|Prokka|HCHIIPNP_1); gnlProkkaHCHIIPNP_2 (original name was: gnl|Prokka|HCHIIPNP_2); gnlProkkaHCHIIPNP_3 (original name was: gnl|Prokka|HCHIIPNP_3); gnlProkkaHCHIIPNP_4 (original name was: gnl|Prokka|HCHIIPNP_4); gnlProkkaHCHIIPNP_5 (original name was: gnl|Prokka|HCHIIPNP_5); gnlProkkaHCHIIPNP_6 (original name was: gnl|Prokka|HCHIIPNP_6); gnlProkkaHCHIIPNP_7 (original name was: gnl|Prokka|HCHIIPNP_7); gnlProkkaHCHIIPNP_8 (original name was: gnl|Prokka|HCHIIPNP_8); gnlProkkaHCHIIPNP_9 (original name was: gnl|Prokka|HCHIIPNP_9); gnlProkkaHCHIIPNP_10 (original name was: gnl|Prokka|HCHIIPNP_10); gnlProkkaHCHIIPNP_12 (original name was: gnl|Prokka|HCHIIPNP_12); gnlProkkaHCHIIPNP_13 (original name was: gnl|Prokka|HCHIIPNP_13); gnlProkkaHCHIIPNP_19 (original name was: gnl|Prokka|HCHIIPNP_19); gnlProkkaHCHIIPNP_25 (original name was: gnl|Prokka|HCHIIPNP_25); gnlProkkaHCHIIPNP_27 (original name was: gnl|Prokka|HCHIIPNP_27); gnlProkkaHCHIIPNP_29 (original name was: gnl|Prokka|HCHIIPNP_29)

Compact view

gnlProkkaHCHIIPNP_11 - Region 1 - RiPP-like

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Location: 336,564 - 348,714 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHCHIIPNP_26 - Region 1 - cyclic-lactone-autoinducer

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Location: 227,450 - 248,155 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

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core biosynthetic genes

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transport-related genes

regulatory genes

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resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHCHIIPNP_28 - Region 1 - T3PKS

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Location: 78,350 - 119,519 nt. (total: 41,170 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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NRPS/PKS domains

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHCHIIPNP_30 - Region 1 - terpene

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Location: 77,205 - 92,815 nt. (total: 15,611 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.