GCA_001633405.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaLDOJCBOO_1 (original name was: gnl|Prokka|LDOJCBOO_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RiPP-like	103,105	115,255

gnlProkkaLDOJCBOO_7 (original name was: gnl|Prokka|LDOJCBOO_7)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	terpene	24,348	45,229

gnlProkkaLDOJCBOO_33 (original name was: gnl|Prokka|LDOJCBOO_33)

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	cyclic-lactone-autoinducer	207,377	228,088

gnlProkkaLDOJCBOO_44 (original name was: gnl|Prokka|LDOJCBOO_44)

Region	Type	From	To	Most similar known cluster		Similarity
Region 34.1	T3PKS	43,198	84,367

Region	Type	From	To	Similarity
Region 1.1	RiPP-like	103,105	115,255
Region 7.1	terpene	24,348	45,229
Region 33.1	cyclic-lactone-autoinducer	207,377	228,088
Region 34.1	T3PKS	43,198	84,367

No secondary metabolite regions were found in these records:: gnlProkkaLDOJCBOO_2 (original name was: gnl|Prokka|LDOJCBOO_2); gnlProkkaLDOJCBOO_3 (original name was: gnl|Prokka|LDOJCBOO_3); gnlProkkaLDOJCBOO_4 (original name was: gnl|Prokka|LDOJCBOO_4); gnlProkkaLDOJCBOO_5 (original name was: gnl|Prokka|LDOJCBOO_5); gnlProkkaLDOJCBOO_6 (original name was: gnl|Prokka|LDOJCBOO_6); gnlProkkaLDOJCBOO_8 (original name was: gnl|Prokka|LDOJCBOO_8); gnlProkkaLDOJCBOO_9 (original name was: gnl|Prokka|LDOJCBOO_9); gnlProkkaLDOJCBOO_10 (original name was: gnl|Prokka|LDOJCBOO_10); gnlProkkaLDOJCBOO_11 (original name was: gnl|Prokka|LDOJCBOO_11); gnlProkkaLDOJCBOO_12 (original name was: gnl|Prokka|LDOJCBOO_12); gnlProkkaLDOJCBOO_13 (original name was: gnl|Prokka|LDOJCBOO_13); gnlProkkaLDOJCBOO_14 (original name was: gnl|Prokka|LDOJCBOO_14); gnlProkkaLDOJCBOO_15 (original name was: gnl|Prokka|LDOJCBOO_15); gnlProkkaLDOJCBOO_16 (original name was: gnl|Prokka|LDOJCBOO_16); gnlProkkaLDOJCBOO_17 (original name was: gnl|Prokka|LDOJCBOO_17); gnlProkkaLDOJCBOO_18 (original name was: gnl|Prokka|LDOJCBOO_18); gnlProkkaLDOJCBOO_19 (original name was: gnl|Prokka|LDOJCBOO_19); gnlProkkaLDOJCBOO_20 (original name was: gnl|Prokka|LDOJCBOO_20); gnlProkkaLDOJCBOO_21 (original name was: gnl|Prokka|LDOJCBOO_21); gnlProkkaLDOJCBOO_22 (original name was: gnl|Prokka|LDOJCBOO_22); gnlProkkaLDOJCBOO_23 (original name was: gnl|Prokka|LDOJCBOO_23); gnlProkkaLDOJCBOO_24 (original name was: gnl|Prokka|LDOJCBOO_24); gnlProkkaLDOJCBOO_25 (original name was: gnl|Prokka|LDOJCBOO_25); gnlProkkaLDOJCBOO_26 (original name was: gnl|Prokka|LDOJCBOO_26); gnlProkkaLDOJCBOO_27 (original name was: gnl|Prokka|LDOJCBOO_27); gnlProkkaLDOJCBOO_28 (original name was: gnl|Prokka|LDOJCBOO_28); gnlProkkaLDOJCBOO_29 (original name was: gnl|Prokka|LDOJCBOO_29); gnlProkkaLDOJCBOO_30 (original name was: gnl|Prokka|LDOJCBOO_30); gnlProkkaLDOJCBOO_31 (original name was: gnl|Prokka|LDOJCBOO_31); gnlProkkaLDOJCBOO_32 (original name was: gnl|Prokka|LDOJCBOO_32); gnlProkkaLDOJCBOO_54 (original name was: gnl|Prokka|LDOJCBOO_54); gnlProkkaLDOJCBOO_57 (original name was: gnl|Prokka|LDOJCBOO_57); gnlProkkaLDOJCBOO_58 (original name was: gnl|Prokka|LDOJCBOO_58); gnlProkkaLDOJCBOO_59 (original name was: gnl|Prokka|LDOJCBOO_59)

Compact view

gnlProkkaLDOJCBOO_1 - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 103,105 - 115,255 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaLDOJCBOO_7 - Region 1 - terpene

Download region GenBank file

Download region SVG

Location: 24,348 - 45,229 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaLDOJCBOO_33 - Region 1 - cyclic-lactone-autoinducer

Download region GenBank file

Download region SVG

Location: 207,377 - 228,088 nt. (total: 20,712 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaLDOJCBOO_44 - Region 1 - T3PKS

Download region GenBank file

Download region SVG

Location: 43,198 - 84,367 nt. (total: 41,170 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.