GCA_001633415.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaNEKGAFBM_1 (original name was: gnl|Prokka|NEKGAFBM_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	T3PKS	518,264	544,234

gnlProkkaNEKGAFBM_9 (original name was: gnl|Prokka|NEKGAFBM_9)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	terpene	1,680	22,561

gnlProkkaNEKGAFBM_44 (original name was: gnl|Prokka|NEKGAFBM_44)

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	cyclic-lactone-autoinducer	9,318	30,023

gnlProkkaNEKGAFBM_48 (original name was: gnl|Prokka|NEKGAFBM_48)

Region	Type	From	To	Most similar known cluster		Similarity
Region 30.1	RiPP-like	106,864	119,014

Region	Type	From	To	Similarity
Region 1.1	T3PKS	518,264	544,234
Region 9.1	terpene	1,680	22,561
Region 27.1	cyclic-lactone-autoinducer	9,318	30,023
Region 30.1	RiPP-like	106,864	119,014

No secondary metabolite regions were found in these records:: gnlProkkaNEKGAFBM_2 (original name was: gnl|Prokka|NEKGAFBM_2); gnlProkkaNEKGAFBM_3 (original name was: gnl|Prokka|NEKGAFBM_3); gnlProkkaNEKGAFBM_4 (original name was: gnl|Prokka|NEKGAFBM_4); gnlProkkaNEKGAFBM_5 (original name was: gnl|Prokka|NEKGAFBM_5); gnlProkkaNEKGAFBM_6 (original name was: gnl|Prokka|NEKGAFBM_6); gnlProkkaNEKGAFBM_7 (original name was: gnl|Prokka|NEKGAFBM_7); gnlProkkaNEKGAFBM_8 (original name was: gnl|Prokka|NEKGAFBM_8); gnlProkkaNEKGAFBM_10 (original name was: gnl|Prokka|NEKGAFBM_10); gnlProkkaNEKGAFBM_11 (original name was: gnl|Prokka|NEKGAFBM_11); gnlProkkaNEKGAFBM_12 (original name was: gnl|Prokka|NEKGAFBM_12); gnlProkkaNEKGAFBM_13 (original name was: gnl|Prokka|NEKGAFBM_13); gnlProkkaNEKGAFBM_14 (original name was: gnl|Prokka|NEKGAFBM_14); gnlProkkaNEKGAFBM_15 (original name was: gnl|Prokka|NEKGAFBM_15); gnlProkkaNEKGAFBM_16 (original name was: gnl|Prokka|NEKGAFBM_16); gnlProkkaNEKGAFBM_17 (original name was: gnl|Prokka|NEKGAFBM_17); gnlProkkaNEKGAFBM_18 (original name was: gnl|Prokka|NEKGAFBM_18); gnlProkkaNEKGAFBM_19 (original name was: gnl|Prokka|NEKGAFBM_19); gnlProkkaNEKGAFBM_20 (original name was: gnl|Prokka|NEKGAFBM_20); gnlProkkaNEKGAFBM_21 (original name was: gnl|Prokka|NEKGAFBM_21); gnlProkkaNEKGAFBM_22 (original name was: gnl|Prokka|NEKGAFBM_22); gnlProkkaNEKGAFBM_23 (original name was: gnl|Prokka|NEKGAFBM_23); gnlProkkaNEKGAFBM_24 (original name was: gnl|Prokka|NEKGAFBM_24); gnlProkkaNEKGAFBM_25 (original name was: gnl|Prokka|NEKGAFBM_25); gnlProkkaNEKGAFBM_33 (original name was: gnl|Prokka|NEKGAFBM_33); gnlProkkaNEKGAFBM_46 (original name was: gnl|Prokka|NEKGAFBM_46); gnlProkkaNEKGAFBM_47 (original name was: gnl|Prokka|NEKGAFBM_47); gnlProkkaNEKGAFBM_49 (original name was: gnl|Prokka|NEKGAFBM_49)

Compact view

gnlProkkaNEKGAFBM_1 - Region 1 - T3PKS

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Location: 518,264 - 544,234 nt. (total: 25,971 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaNEKGAFBM_9 - Region 1 - terpene

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Location: 1,680 - 22,561 nt. (total: 20,882 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaNEKGAFBM_44 - Region 1 - cyclic-lactone-autoinducer

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Location: 9,318 - 30,023 nt. (total: 20,706 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaNEKGAFBM_48 - Region 1 - RiPP-like

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Location: 106,864 - 119,014 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.