GCA_001639565.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaHPINLIOM_12 (original name was: gnl|Prokka|HPINLIOM_12)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	terpene	26,198	47,079

gnlProkkaHPINLIOM_33 (original name was: gnl|Prokka|HPINLIOM_33)

Region	Type	From	To	Most similar known cluster		Similarity
Region 21.1	T3PKS	170,487	211,656

gnlProkkaHPINLIOM_39 (original name was: gnl|Prokka|HPINLIOM_39)

Region	Type	From	To	Most similar known cluster		Similarity
Region 23.1	cyclic-lactone-autoinducer	8,179	28,884

gnlProkkaHPINLIOM_41 (original name was: gnl|Prokka|HPINLIOM_41)

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	RiPP-like	111,760	123,910

Region	Type	From	To	Similarity
Region 12.1	terpene	26,198	47,079
Region 21.1	T3PKS	170,487	211,656
Region 23.1	cyclic-lactone-autoinducer	8,179	28,884
Region 25.1	RiPP-like	111,760	123,910

No secondary metabolite regions were found in these records:: gnlProkkaHPINLIOM_1 (original name was: gnl|Prokka|HPINLIOM_1); gnlProkkaHPINLIOM_2 (original name was: gnl|Prokka|HPINLIOM_2); gnlProkkaHPINLIOM_3 (original name was: gnl|Prokka|HPINLIOM_3); gnlProkkaHPINLIOM_4 (original name was: gnl|Prokka|HPINLIOM_4); gnlProkkaHPINLIOM_5 (original name was: gnl|Prokka|HPINLIOM_5); gnlProkkaHPINLIOM_6 (original name was: gnl|Prokka|HPINLIOM_6); gnlProkkaHPINLIOM_7 (original name was: gnl|Prokka|HPINLIOM_7); gnlProkkaHPINLIOM_8 (original name was: gnl|Prokka|HPINLIOM_8); gnlProkkaHPINLIOM_9 (original name was: gnl|Prokka|HPINLIOM_9); gnlProkkaHPINLIOM_10 (original name was: gnl|Prokka|HPINLIOM_10); gnlProkkaHPINLIOM_11 (original name was: gnl|Prokka|HPINLIOM_11); gnlProkkaHPINLIOM_13 (original name was: gnl|Prokka|HPINLIOM_13); gnlProkkaHPINLIOM_14 (original name was: gnl|Prokka|HPINLIOM_14); gnlProkkaHPINLIOM_15 (original name was: gnl|Prokka|HPINLIOM_15); gnlProkkaHPINLIOM_16 (original name was: gnl|Prokka|HPINLIOM_16); gnlProkkaHPINLIOM_17 (original name was: gnl|Prokka|HPINLIOM_17); gnlProkkaHPINLIOM_18 (original name was: gnl|Prokka|HPINLIOM_18); gnlProkkaHPINLIOM_19 (original name was: gnl|Prokka|HPINLIOM_19); gnlProkkaHPINLIOM_22 (original name was: gnl|Prokka|HPINLIOM_22); gnlProkkaHPINLIOM_38 (original name was: gnl|Prokka|HPINLIOM_38); gnlProkkaHPINLIOM_40 (original name was: gnl|Prokka|HPINLIOM_40); gnlProkkaHPINLIOM_42 (original name was: gnl|Prokka|HPINLIOM_42)

Compact view

gnlProkkaHPINLIOM_12 - Region 1 - terpene

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Location: 26,198 - 47,079 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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other genes

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KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHPINLIOM_33 - Region 1 - T3PKS

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Location: 170,487 - 211,656 nt. (total: 41,170 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHPINLIOM_39 - Region 1 - cyclic-lactone-autoinducer

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Location: 8,179 - 28,884 nt. (total: 20,706 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHPINLIOM_41 - Region 1 - RiPP-like

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Location: 111,760 - 123,910 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.