GCA_001870755.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaPBGGMLCF_35 (original name was: gnl|Prokka|PBGGMLCF_35)

Region	Type	From	To	Most similar known cluster		Similarity
Region 31.1	RiPP-like	1	8,583

gnlProkkaPBGGMLCF_37 (original name was: gnl|Prokka|PBGGMLCF_37)

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	RiPP-like	76,745	87,137

gnlProkkaPBGGMLCF_38 (original name was: gnl|Prokka|PBGGMLCF_38)

Region	Type	From	To	Most similar known cluster		Similarity
Region 34.1	RiPP-like	39,196	50,431

gnlProkkaPBGGMLCF_39 (original name was: gnl|Prokka|PBGGMLCF_39)

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	hglE-KS	1	14,292

Region	Type	From	To	Similarity
Region 31.1	RiPP-like	1	8,583
Region 33.1	RiPP-like	76,745	87,137
Region 34.1	RiPP-like	39,196	50,431
Region 35.1	hglE-KS	1	14,292

No secondary metabolite regions were found in these records:: gnlProkkaPBGGMLCF_3 (original name was: gnl|Prokka|PBGGMLCF_3); gnlProkkaPBGGMLCF_5 (original name was: gnl|Prokka|PBGGMLCF_5); gnlProkkaPBGGMLCF_6 (original name was: gnl|Prokka|PBGGMLCF_6); gnlProkkaPBGGMLCF_7 (original name was: gnl|Prokka|PBGGMLCF_7); gnlProkkaPBGGMLCF_9 (original name was: gnl|Prokka|PBGGMLCF_9); gnlProkkaPBGGMLCF_10 (original name was: gnl|Prokka|PBGGMLCF_10); gnlProkkaPBGGMLCF_11 (original name was: gnl|Prokka|PBGGMLCF_11); gnlProkkaPBGGMLCF_12 (original name was: gnl|Prokka|PBGGMLCF_12); gnlProkkaPBGGMLCF_13 (original name was: gnl|Prokka|PBGGMLCF_13); gnlProkkaPBGGMLCF_14 (original name was: gnl|Prokka|PBGGMLCF_14); gnlProkkaPBGGMLCF_15 (original name was: gnl|Prokka|PBGGMLCF_15); gnlProkkaPBGGMLCF_16 (original name was: gnl|Prokka|PBGGMLCF_16); gnlProkkaPBGGMLCF_17 (original name was: gnl|Prokka|PBGGMLCF_17); gnlProkkaPBGGMLCF_18 (original name was: gnl|Prokka|PBGGMLCF_18); gnlProkkaPBGGMLCF_19 (original name was: gnl|Prokka|PBGGMLCF_19); gnlProkkaPBGGMLCF_20 (original name was: gnl|Prokka|PBGGMLCF_20); gnlProkkaPBGGMLCF_21 (original name was: gnl|Prokka|PBGGMLCF_21); gnlProkkaPBGGMLCF_22 (original name was: gnl|Prokka|PBGGMLCF_22); gnlProkkaPBGGMLCF_23 (original name was: gnl|Prokka|PBGGMLCF_23); gnlProkkaPBGGMLCF_24 (original name was: gnl|Prokka|PBGGMLCF_24); gnlProkkaPBGGMLCF_25 (original name was: gnl|Prokka|PBGGMLCF_25); gnlProkkaPBGGMLCF_26 (original name was: gnl|Prokka|PBGGMLCF_26); gnlProkkaPBGGMLCF_27 (original name was: gnl|Prokka|PBGGMLCF_27); gnlProkkaPBGGMLCF_28 (original name was: gnl|Prokka|PBGGMLCF_28); gnlProkkaPBGGMLCF_29 (original name was: gnl|Prokka|PBGGMLCF_29); gnlProkkaPBGGMLCF_30 (original name was: gnl|Prokka|PBGGMLCF_30); gnlProkkaPBGGMLCF_31 (original name was: gnl|Prokka|PBGGMLCF_31); gnlProkkaPBGGMLCF_32 (original name was: gnl|Prokka|PBGGMLCF_32); gnlProkkaPBGGMLCF_33 (original name was: gnl|Prokka|PBGGMLCF_33); gnlProkkaPBGGMLCF_34 (original name was: gnl|Prokka|PBGGMLCF_34); gnlProkkaPBGGMLCF_36 (original name was: gnl|Prokka|PBGGMLCF_36); gnlProkkaPBGGMLCF_40 (original name was: gnl|Prokka|PBGGMLCF_40); gnlProkkaPBGGMLCF_41 (original name was: gnl|Prokka|PBGGMLCF_41); gnlProkkaPBGGMLCF_42 (original name was: gnl|Prokka|PBGGMLCF_42); gnlProkkaPBGGMLCF_43 (original name was: gnl|Prokka|PBGGMLCF_43); gnlProkkaPBGGMLCF_44 (original name was: gnl|Prokka|PBGGMLCF_44)

Compact view

gnlProkkaPBGGMLCF_35 - Region 1 - RiPP-like

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Location: 1 - 8,583 nt. (total: 8,583 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPBGGMLCF_37 - Region 1 - RiPP-like

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Location: 76,745 - 87,137 nt. (total: 10,393 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPBGGMLCF_38 - Region 1 - RiPP-like

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Location: 39,196 - 50,431 nt. (total: 11,236 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPBGGMLCF_39 - Region 1 - hglE-KS

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Location: 1 - 14,292 nt. (total: 14,292 nt) Show pHMM detection rules used

Region on contig edge.

hglE-KS: (hglE or hglD)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 14292:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg35_4

PKS_AT (38..333): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 53.5
Methoxymalonyl-CoA: 42.7
Methylmalonyl-CoA: 21.4
inactive: 13.9
2-Methylbutyryl-CoA: 13.9
Propionyl-CoA: 11.0
Isobutyryl-CoA: 10.1
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0