QueryID	Family	Cluster	IsBegin	IsEnd	IrId	IrLen	Ngaps	OrfBegin	OrfEnd	Strand	OrfLen	Evalue	Type
MHCKMFAJ_1	ISL3	ISL3_126	624	821	0	0	0	624	821	+	198	2.8e-39	p
MHCKMFAJ_100	IS1182	IS1182_42	968	1582	19	28	0	1104	1547	-	444	2.8e-23	p
MHCKMFAJ_100	ISL3	ISL3_126	1669	1947	0	0	0	1669	1947	-	279	3.7e-54	p
MHCKMFAJ_102	IS3	IS3_359	12	1524	21	27	0	2	1522	-	1521	2.1e-98	c
MHCKMFAJ_104	ISL3	ISL3_126	85	1166	9	9	0	2	1080	+	1079	1.3e-52	p
MHCKMFAJ_11	ISL3	ISL3_126	45	1598	10	10	0	3	1305	-	1303	4.2e-73	p
MHCKMFAJ_12	ISL3	ISL3_126	46936	47175	0	0	0	46936	47175	-	240	1.9e-43	p
MHCKMFAJ_13	ISL3	ISL3_126	2	197	0	0	0	2	197	+	196	1.3e-35	p
MHCKMFAJ_18	IS200/IS605	IS200/IS605_152	158	1534	0	0	0	158	1534	+	1377	7.2e-11	p
MHCKMFAJ_18	IS3	IS3_472	4112	4237	0	0	0	4112	4237	+	126	4.5e-12	p
MHCKMFAJ_18	IS3	IS3_206	4230	5321	17	21	1	4265	5296	+	1032	1.3e-80	p
MHCKMFAJ_20	IS200/IS605	IS200/IS605_132	28172	29980	0	0	0	28172	29449	-	1278	1.6e-282	c
MHCKMFAJ_20	IS6	IS6_292	31683	32039	21	27	0	31589	31890	-	302	4.2e-15	p
MHCKMFAJ_21	IS200/IS605	IS200/IS605_384	13097	13564	0	0	0	13097	13564	-	468	8e-61	c
MHCKMFAJ_24	IS3	IS3_176	2749	4484	45	60	3	2809	4392	-	1584	1.7e-76	c
MHCKMFAJ_24	IS3	IS3_61	27330	28643	18	23	1	27673	28641	-	969	1.5e-79	p
MHCKMFAJ_26	ISL3	ISL3_126	27808	27924	0	0	0	27808	27924	+	117	4.7e-20	p
MHCKMFAJ_29	IS200/IS605	IS200/IS605_164	71273	71638	0	0	0	71273	71638	-	366	1.6e-80	p
MHCKMFAJ_31	ISL3	ISL3_126	51	307	17	23	0	3	347	-	345	1.5e-73	p
MHCKMFAJ_34	IS21	IS21_259	15571	17209	20	23	1	15593	16957	-	1365	5.3e-13	p
MHCKMFAJ_36	ISL3	ISL3_126	28	283	15	19	0	2	337	+	336	1.4e-21	p
MHCKMFAJ_37	ISL3	ISL3_126	77	508	19	26	0	3	530	-	528	3.2e-105	p
MHCKMFAJ_39	ISL3	ISL3_126	19734	19973	0	0	0	19734	19973	-	240	1.3e-45	p
MHCKMFAJ_40	ISL3	ISL3_126	1	87	0	0	0	1	87	+	87	1.3e-13	p
MHCKMFAJ_40	IS200/IS605	IS200/IS605_164	67331	68182	0	0	0	67331	68182	+	852	4.7e-164	c
MHCKMFAJ_45	ISL3	ISL3_126	2	197	0	0	0	2	197	+	196	1.3e-35	p
MHCKMFAJ_48	ISL3	ISL3_126	82	330	34	53	1	2	378	+	377	1.1e-53	p
MHCKMFAJ_48	ISL3	ISL3_126	15100	15531	19	26	0	15276	15605	+	330	8.7e-70	p
MHCKMFAJ_49	IS30	IS30_173	9383	9943	25	38	0	9494	9857	+	364	1.2e-14	p
MHCKMFAJ_52	ISL3	ISL3_126	46	2248	22	32	1	3	2163	-	2161	9.7e-73	c
MHCKMFAJ_52	IS21	IS21_122	5269	6293	20	25	0	5394	6116	+	723	1.9e-12	p
MHCKMFAJ_55	IS1182	IS1182_42	337	2198	27	35	0	370	2040	-	1671	1.8e-158	c
MHCKMFAJ_58	IS200/IS605	IS200/IS605_132	1	267	0	0	0	1	267	+	267	3.1e-58	p
MHCKMFAJ_59	ISL3	ISL3_126	77	508	19	26	0	3	479	-	477	2.3e-104	p
MHCKMFAJ_60	ISL3	ISL3_126	11134	11331	0	0	0	11134	11331	+	198	2.8e-39	p
MHCKMFAJ_62	IS200/IS605	IS200/IS605_164	8902	10713	0	0	0	8902	10713	-	1812	3.1e-279	c
MHCKMFAJ_67	IS200/IS605	IS200/IS605_164	6503	9154	0	0	0	6503	9154	-	2652	1.6e-134	c
MHCKMFAJ_68	ISL3	ISL3_126	77	508	19	26	0	3	479	-	477	2.3e-104	p
MHCKMFAJ_7	IS200/IS605	IS200/IS605_442	4	444	0	0	0	4	444	+	441	1.6e-43	p
MHCKMFAJ_75	ISL3	ISL3_126	6812	7090	0	0	0	6812	7090	-	279	3.7e-54	p
MHCKMFAJ_76	ISL3	ISL3_126	6642	6839	0	0	0	6642	6839	+	198	2.8e-39	p
MHCKMFAJ_79	IS200/IS605	IS200/IS605_164	3	266	0	0	0	3	266	+	264	1.8e-55	p
MHCKMFAJ_81	ISL3	ISL3_126	5657	5854	0	0	0	5657	5854	+	198	2.8e-39	p
MHCKMFAJ_82	ISL3	ISL3_126	51	307	17	23	0	3	347	-	345	1.5e-73	p
MHCKMFAJ_84	ISL3	ISL3_126	51	307	17	23	0	3	347	-	345	1.5e-73	p
MHCKMFAJ_84	IS21	IS21_288	5180	7463	33	46	1	5127	7528	+	2402	9.7e-11	p
MHCKMFAJ_85	ISL3	ISL3_126	4914	5468	19	26	0	5042	5542	+	501	2.6e-109	c
MHCKMFAJ_87	ISL3	ISL3_126	4080	4277	0	0	0	4080	4277	+	198	2.8e-39	p
MHCKMFAJ_88	ISL3	ISL3_126	51	307	17	23	0	3	347	-	345	1.5e-73	p
MHCKMFAJ_88	ISL3	ISL3_126	3697	3980	31	50	1	3618	4007	+	390	4.8e-61	p
MHCKMFAJ_90	IS3	IS3_359	60	803	14	15	0	1	438	-	438	3.8e-28	p
MHCKMFAJ_93	IS200/IS605	IS200/IS605_164	2	502	0	0	0	2	502	-	501	4.4e-86	c