GCA_002549945.1 - 6 region(s)

Identified primary metabolite regions

c00006_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_6)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Pyruvate2acetate-formate	SCFA	9,265	32,256	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 6.2	Rnf_complex	E-MGC	52,390	77,367	Rnf complex C. sporogenes	RNF	83%

c00011_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_11)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	acetate2butyrate	SCFA	250,000	276,243	Acetate to butyrate C. sporogenes	BUT	100%

c00022_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_22)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	Putrescine2spermidine	Aliphatic_amine	32	24,274	Arginine2putrescine R. gnavus	PUTR	100%

c00055_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_55)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	Others_HGD_unassigned	Putative	11,444	42,414

c00082_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_82)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 82.1	TPP_AA_metabolism	Putative	85,072	113,841	Threonine to propionate E. coli	PROP	20%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_1); c00002_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_2); c00003_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_3); c00004_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_4); c00005_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_5); c00007_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_7); c00008_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_8); c00009_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_9); c00010_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_10); c00012_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_12); c00013_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_13); c00014_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_14); c00015_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_15); c00016_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_16); c00017_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_17); c00018_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_18); c00019_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_19); c00020_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_20); c00021_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_21); c00023_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_23); c00024_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_24); c00025_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_25); c00026_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_26); c00027_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_27); c00028_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_28); c00029_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_29); c00030_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_30); c00031_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_31); c00032_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_32); c00033_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_33); c00034_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_34); c00035_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_35); c00036_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_36); c00037_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_37); c00038_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_38); c00039_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_39); c00040_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_40); c00041_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_41); c00042_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_42); c00043_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_43); c00044_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_44); c00045_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_45); c00046_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_46); c00047_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_47); c00048_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_48); c00049_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_49); c00050_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_50); c00051_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_51); c00052_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_52); c00053_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_53); c00054_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_54); c00056_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_56); c00057_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_57); c00058_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_58); c00059_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_59); c00060_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_60); c00061_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_61); c00062_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_62); c00063_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_63); c00064_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_64); c00065_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_65); c00066_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_66); c00067_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_67); c00068_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_68); c00069_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_69); c00070_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_70); c00071_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_71); c00072_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_72); c00073_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_73); c00074_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_74); c00075_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_75); c00076_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_76); c00077_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_77); c00078_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_78); c00079_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_79); c00080_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_80); c00081_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_81); c00083_gnlPro.. (original name was: gnl|Prokka|NGDIILCE_83)

Compact view

c00006_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 9,265 - 32,256 nt. (total: 22,992 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00006_gnlPro.. - Region 2 - Rnf_complex

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Location: 52,390 - 77,367 nt. (total: 24,978 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00011_gnlPro.. - Region 1 - acetate2butyrate

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Location: 250,000 - 276,243 nt. (total: 26,244 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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c00022_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 32 - 24,274 nt. (total: 24,243 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00055_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 11,444 - 42,414 nt. (total: 30,971 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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No matches found.

c00082_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 85,072 - 113,841 nt. (total: 28,770 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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