GCA_002796635.1 - 7 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaDIHAIPFB_1 (original name was: gnl|Prokka|DIHAIPFB_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RaS-RiPP	1	18,081

gnlProkkaDIHAIPFB_3 (original name was: gnl|Prokka|DIHAIPFB_3)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	NRPS-like	8,096	43,492	asukamycin	Polyketide:Type II polyketide	4%

gnlProkkaDIHAIPFB_9 (original name was: gnl|Prokka|DIHAIPFB_9)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	lanthipeptide-class-iv	1	12,546

gnlProkkaDIHAIPFB_16 (original name was: gnl|Prokka|DIHAIPFB_16)

Region	Type	From	To	Most similar known cluster		Similarity
Region 16.1	RaS-RiPP	17,396	30,165	streptide	RiPP	100%

gnlProkkaDIHAIPFB_22 (original name was: gnl|Prokka|DIHAIPFB_22)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	RiPP-like	1	21,294

gnlProkkaDIHAIPFB_42 (original name was: gnl|Prokka|DIHAIPFB_42)

Region	Type	From	To	Most similar known cluster		Similarity
Region 42.1	lanthipeptide-class-v	1	7,268

gnlProkkaDIHAIPFB_52 (original name was: gnl|Prokka|DIHAIPFB_52)

Region	Type	From	To	Most similar known cluster		Similarity
Region 52.1	RiPP-like	1	2,820

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	RaS-RiPP	1	18,081
Region 3.1	NRPS-like	8,096	43,492	asukamycin	Polyketide:Type II polyketide	4%
Region 9.1	lanthipeptide-class-iv	1	12,546
Region 16.1	RaS-RiPP	17,396	30,165	streptide	RiPP	100%
Region 22.1	RiPP-like	1	21,294
Region 42.1	lanthipeptide-class-v	1	7,268
Region 52.1	RiPP-like	1	2,820

Compact view

gnlProkkaDIHAIPFB_1 - Region 1 - RaS-RiPP

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Location: 1 - 18,081 nt. (total: 18,081 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaDIHAIPFB_3 - Region 1 - NRPS-like

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Location: 8,096 - 43,492 nt. (total: 35,397 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

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resistance

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NRPS/PKS domains

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg3_26

Search NORINE for peptide: strict or relaxed

AMP-binding (6..388): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVTSCALIYK
Nearest Stachelhaus code(s):: Ala DVTNFALIYK (62% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaDIHAIPFB_9 - Region 1 - lanthipeptide-class-iv

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Location: 1 - 12,546 nt. (total: 12,546 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

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core biosynthetic genes

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KnownClusterBlast

Lanthipeptides

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaDIHAIPFB_16 - Region 1 - RaS-RiPP

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Location: 17,396 - 30,165 nt. (total: 12,770 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaDIHAIPFB_22 - Region 1 - RiPP-like

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Location: 1 - 21,294 nt. (total: 21,294 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaDIHAIPFB_42 - Region 1 - lanthipeptide-class-v

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Location: 1 - 7,268 nt. (total: 7,268 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-v: (APH and HopA1)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaDIHAIPFB_52 - Region 1 - RiPP-like

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Location: 1 - 2,820 nt. (total: 2,820 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.