GCA_002849935.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaAHBKFOBD_1 (original name was: gnl|Prokka|AHBKFOBD_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	arylpolyene	399,137	439,922
Region 1.2	NRPS	1,595,688	1,638,552

gnlProkkaAHBKFOBD_2 (original name was: gnl|Prokka|AHBKFOBD_2)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	RiPP-like	18,312	29,394

Region	Type	From	To	Similarity
Region 1.1	arylpolyene	399,137	439,922
Region 1.2	NRPS	1,595,688	1,638,552
Region 2.1	RiPP-like	18,312	29,394

Compact view

gnlProkkaAHBKFOBD_1 - Region 1 - arylpolyene

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Location: 399,137 - 439,922 nt. (total: 40,786 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

NRPS/PKS substrates

NRPS/PKS substrate predictions

gnlProkkaAHBKFOBD_1 - Region 2 - NRPS

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Location: 1,595,688 - 1,638,552 nt. (total: 42,865 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

Filter:

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 2, location 1595687 - 1638552:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Ala)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg1_1741

Search NORINE for peptide: strict or relaxed

AMP-binding (8..390): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVTSMALVYK
Nearest Stachelhaus code(s):: Ala DVFSVALVYK (71% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaAHBKFOBD_2 - Region 1 - RiPP-like

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Location: 18,312 - 29,394 nt. (total: 11,083 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.