GCA_003052945.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaHMDEEHAB_2 (original name was: gnl|Prokka|HMDEEHAB_2)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	RiPP-like	1,340	11,525

gnlProkkaHMDEEHAB_6 (original name was: gnl|Prokka|HMDEEHAB_6)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	RiPP-like	1	6,702

gnlProkkaHMDEEHAB_31 (original name was: gnl|Prokka|HMDEEHAB_31)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	T3PKS	35,369	76,541

Region	Type	From	To	Similarity
Region 2.1	RiPP-like	1,340	11,525
Region 5.1	RiPP-like	1	6,702
Region 22.1	T3PKS	35,369	76,541

No secondary metabolite regions were found in these records:: gnlProkkaHMDEEHAB_1 (original name was: gnl|Prokka|HMDEEHAB_1); gnlProkkaHMDEEHAB_3 (original name was: gnl|Prokka|HMDEEHAB_3); gnlProkkaHMDEEHAB_5 (original name was: gnl|Prokka|HMDEEHAB_5); gnlProkkaHMDEEHAB_15 (original name was: gnl|Prokka|HMDEEHAB_15); gnlProkkaHMDEEHAB_16 (original name was: gnl|Prokka|HMDEEHAB_16); gnlProkkaHMDEEHAB_17 (original name was: gnl|Prokka|HMDEEHAB_17); gnlProkkaHMDEEHAB_18 (original name was: gnl|Prokka|HMDEEHAB_18); gnlProkkaHMDEEHAB_19 (original name was: gnl|Prokka|HMDEEHAB_19); gnlProkkaHMDEEHAB_20 (original name was: gnl|Prokka|HMDEEHAB_20); gnlProkkaHMDEEHAB_21 (original name was: gnl|Prokka|HMDEEHAB_21); gnlProkkaHMDEEHAB_22 (original name was: gnl|Prokka|HMDEEHAB_22); gnlProkkaHMDEEHAB_23 (original name was: gnl|Prokka|HMDEEHAB_23); gnlProkkaHMDEEHAB_24 (original name was: gnl|Prokka|HMDEEHAB_24); gnlProkkaHMDEEHAB_25 (original name was: gnl|Prokka|HMDEEHAB_25); gnlProkkaHMDEEHAB_26 (original name was: gnl|Prokka|HMDEEHAB_26); gnlProkkaHMDEEHAB_27 (original name was: gnl|Prokka|HMDEEHAB_27); gnlProkkaHMDEEHAB_28 (original name was: gnl|Prokka|HMDEEHAB_28); gnlProkkaHMDEEHAB_29 (original name was: gnl|Prokka|HMDEEHAB_29); gnlProkkaHMDEEHAB_30 (original name was: gnl|Prokka|HMDEEHAB_30); gnlProkkaHMDEEHAB_32 (original name was: gnl|Prokka|HMDEEHAB_32); gnlProkkaHMDEEHAB_33 (original name was: gnl|Prokka|HMDEEHAB_33); gnlProkkaHMDEEHAB_36 (original name was: gnl|Prokka|HMDEEHAB_36); gnlProkkaHMDEEHAB_39 (original name was: gnl|Prokka|HMDEEHAB_39); gnlProkkaHMDEEHAB_41 (original name was: gnl|Prokka|HMDEEHAB_41); gnlProkkaHMDEEHAB_42 (original name was: gnl|Prokka|HMDEEHAB_42); gnlProkkaHMDEEHAB_43 (original name was: gnl|Prokka|HMDEEHAB_43); gnlProkkaHMDEEHAB_44 (original name was: gnl|Prokka|HMDEEHAB_44); gnlProkkaHMDEEHAB_45 (original name was: gnl|Prokka|HMDEEHAB_45)

Compact view

gnlProkkaHMDEEHAB_2 - Region 1 - RiPP-like

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Location: 1,340 - 11,525 nt. (total: 10,186 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHMDEEHAB_6 - Region 1 - RiPP-like

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Location: 1 - 6,702 nt. (total: 6,702 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHMDEEHAB_31 - Region 1 - T3PKS

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Location: 35,369 - 76,541 nt. (total: 41,173 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.