Rank	Genome ID	Species	Strain	BioSample ID	Date	Location	Host	Allelic distance	ARGs	VFs	PGs	PPRS
1	GCA_003129655.1	Streptococcus thermophilus	KU30	SAMN09099014	2009-10-01	China:Hebei	-	0	0	22	32	38.83
2	GCA_000182875.1	Streptococcus thermophilus ND03	ND03	SAMN02603938	-	-	-	3	0	22	29	36.40
3	GCA_019449755.1	Streptococcus thermophilus	Brie1	SAMN19116153	2020-11-09	Ireland	-	5	0	22	33	39.66
4	GCA_903891025.1	Streptococcus thermophilus	-	SAMEA6957279	1990	France	-	5	0	22	29	36.40
5	GCA_002012365.1	Streptococcus thermophilus	APC151	SAMN06349996	2015-02-13	Ireland	fish	6	0	22	29	36.40
6	GCA_020829085.1	Streptococcus thermophilus	B2	SAMN18523655	2019	Ireland: Cork City	-	6	0	22	33	39.66
7	GCA_020829095.1	Streptococcus thermophilus	B9	SAMN18713787	2020	Ireland: Cork	-	6	0	22	33	39.66
8	GCA_020844005.1	Streptococcus thermophilus	4078	SAMN16933231	1996	Ireland	-	6	0	22	29	36.40
9	GCA_025187665.1	Streptococcus thermophilus	CIRM-BIA 1055	SAMN10365626	1990	France	-	6	0	22	33	39.66
10	GCA_001266475.1	Streptococcus thermophilus	KLDS3.1012	SAMN03957073	2009-02-02	China: Inner Mongolia	-	7	0	22	29	36.40
11	GCA_020829125.1	Streptococcus thermophilus	B1	SAMN18523653	2019	Ireland: Cork city	-	8	0	22	33	39.66
12	GCA_020829055.1	Streptococcus thermophilus	B4	SAMN18713779	2019	Ireland: Cork	-	10	0	22	33	39.66
13	GCA_020075895.1	Streptococcus thermophilus	CF2_14	SAMN06464117	2016-10-15	USA:MD	Homo sapiens	19	0	22	33	39.66
14	GCA_025187465.1	Streptococcus thermophilus	CIRM-BIA 1058	SAMN10365637	1995	France	-	20	0	22	33	39.66
15	GCA_000262675.1	Streptococcus thermophilus MN-ZLW-002	MN-ZLW-002	SAMN02603848	-	China: Gannan region of Gansu province	-	301	0	25	29	38.29
16	GCA_019449885.1	Streptococcus thermophilus	Nect1	SAMN19136548	2020-11-09	Ireland	-	301	0	25	33	41.40
17	GCA_020075985.1	Streptococcus thermophilus	CF10_14	SAMN15078596	2018-03-12	USA:MD	Homo sapiens	302	0	24	33	40.80
18	GCA_023278025.1	Streptococcus thermophilus	VHProbi R08	SAMN27162337	2021-01-25	China:Qingdao	Homo sapiens	303	0	25	29	38.29
19	GCA_025186765.1	Streptococcus thermophilus	CIRM-BIA 1051	SAMN10365658	1974	Mongolia	-	304	0	25	32	40.61
20	GCA_903891015.1	Streptococcus thermophilus	-	SAMEA6957278	1974	Mongolia	-	304	0	25	28	37.54
21	GCA_001280285.1	Streptococcus thermophilus	MN-BM-A01	SAMN04002535	2012-09-15	China: Gansu	-	312	0	25	29	38.29
22	GCA_025187415.1	Streptococcus thermophilus	CIRM-BIA 24	SAMN10365638	1959	France	-	313	0	18	31	35.85
23	GCA_025187585.1	Streptococcus thermophilus	CIRM-BIA 1860	SAMN10365630	1979	Austria	-	316	0	23	33	40.22
24	GCA_025187085.1	Streptococcus thermophilus	CIRM-BIA 1035	SAMN10365651	1973	France	-	326	0	25	33	41.40
25	GCA_903890815.1	Streptococcus thermophilus	-	SAMEA6957272	1973	France	-	326	0	25	29	38.29
26	GCA_020076085.1	Streptococcus thermophilus	CF3_14	SAMN15078635	2018-03-12	USA:MD	Homo sapiens	338	0	22	33	39.66
27	GCA_025187005.1	Streptococcus thermophilus	CIRM-BIA 1358	SAMN10365653	1974	France	-	344	0	28	32	42.52
28	GCA_903891245.1	Streptococcus thermophilus	-	SAMEA6957284	1974	France	-	344	0	28	28	39.60
29	GCA_025187305.1	Streptococcus thermophilus	CIRM-BIA 32	SAMN10365643	1964	France	-	351	0	18	33	37.59
30	GCA_025187365.1	Streptococcus thermophilus	CIRM-BIA 18	SAMN10365640	1964	France	-	351	0	18	33	37.59
31	GCA_903885985.1	Streptococcus thermophilus	-	SAMEA6957286	1964	France	-	352	0	18	29	34.13
32	GCA_903886345.1	Streptococcus thermophilus	-	SAMEA6957292	1964	France	-	353	0	18	29	34.13
33	GCA_039783625.1	Streptococcus thermophilus	CNRZ302	SAMN16933247	1995	Ireland	-	356	0	18	29	34.13
34	GCA_019449795.1	Streptococcus thermophilus	Rico65	SAMN19116208	2020-11-09	Ireland	-	372	0	21	33	39.12
35	GCA_025187495.1	Streptococcus thermophilus	CIRM-BIA 1363	SAMN10365634	1993	France	-	372	0	20	33	38.59
36	GCA_039783255.1	Streptococcus thermophilus	MM1	SAMN16933240	2017	Ireland	-	372	0	22	28	35.61
37	GCA_001867185.1	Streptococcus thermophilus	UC8547del3	SAMN05463221	2010	Italy: Piacenza	-	373	0	18	33	37.59
38	GCA_039783955.1	Streptococcus thermophilus	4145	SAMN16933254	1996	Ireland	-	373	0	28	29	40.31
39	GCA_001867245.1	Streptococcus thermophilus	UC8547	SAMN05463208	2005	Italy: Como	-	374	0	18	33	37.59
40	GCA_000521305.1	Streptococcus thermophilus TH1436	TH1436	SAMN02402367	2011-04-01	Italy: Friuli Venezia Giulia	-	377	0	28	28	39.60
41	GCA_025187485.1	Streptococcus thermophilus	CIRM-BIA 2104	SAMN10365635	1993	France	-	378	0	18	33	37.59
42	GCA_025129195.1	Streptococcus thermophilus	977	SAMN10365141	1981	Switzerland	-	380	0	27	35	44.20
43	GCA_025132855.1	Streptococcus thermophilus	973	SAMN10365138	1980	Switzerland	-	380	0	27	35	44.20
44	GCA_041509385.1	Streptococcus thermophilus	S24750	SAMN18478718	2019	Switzerland	-	380	0	27	31	41.11
45	GCA_041514295.1	Streptococcus thermophilus	S24732	SAMN18478707	2019	Switzerland	-	380	0	27	31	41.11
46	GCA_042187295.1	Streptococcus thermophilus	S24731	SAMN18490524	2019	Switzerland	-	380	0	27	35	44.20
47	GCA_045159865.1	Streptococcus thermophilus	RR	SAMN16933251	1995	Ireland	-	380	0	22	28	35.61
48	GCA_025127235.1	Streptococcus thermophilus	979	SAMN10365143	1981	Switzerland	-	381	0	27	35	44.20
49	GCA_041514285.1	Streptococcus thermophilus	S24733	SAMN18478708	2019	Switzerland	-	381	0	27	31	41.11
50	GCA_017360005.1	Streptococcus thermophilus	24739	SAMN15923548	1984	Switzerland	-	382	0	25	29	38.29
51	GCA_017367105.1	Streptococcus thermophilus	13497	SAMN15923540	1984	Switzerland	-	382	0	25	33	41.40
52	GCA_025127245.1	Streptococcus thermophilus	980	SAMN10365144	1981	Switzerland	-	382	0	27	35	44.20
53	GCA_025132835.1	Streptococcus thermophilus	974	SAMN10365139	1980	Switzerland	-	382	0	27	35	44.20
54	GCA_041893975.1	Streptococcus thermophilus	S24748	SAMN18490527	2019	Switzerland	-	382	0	27	31	41.11
55	GCA_005864465.1	Streptococcus thermophilus	FAM 13496	SAMN11653956	1988	Switzerland	-	384	0	25	33	41.40
56	GCA_017360305.1	Streptococcus thermophilus	13496	SAMN15923539	1984	Switzerland	-	384	0	25	29	38.29
57	GCA_025127255.1	Streptococcus thermophilus	978	SAMN10365142	1981	Switzerland	-	385	0	27	35	44.20
58	GCA_017367165.1	Streptococcus thermophilus	13495	SAMN15923538	1984	Switzerland	-	394	0	25	30	39.05
59	GCA_040098105.1	Streptococcus thermophilus	CLA-JM-H39	SAMN40631525	2020-04-28	Germany:Aachen	Homo sapiens	407	0	29	33	43.93
60	GCA_040822615.1	Streptococcus thermophilus	ATA-LTC St140700	SAMN41784236	2000-07-14	Turkey: Izmir, Kemalpasa	-	407	0	29	33	43.93
61	GCA_040822555.1	Streptococcus thermophilus	ATA-LTC-Ld120812	SAMN41784240	2012-08-12	Turkey: Istanbul, Sisli	Homo sapiens	408	0	29	33	43.93
62	GCA_002843115.1	Streptococcus thermophilus	DGCC 7710	SAMN08130366	-	-	-	410	0	25	29	38.29
63	GCA_019449955.1	Streptococcus thermophilus	Nect13	SAMN19136543	2020-11-09	Ireland	-	410	0	25	33	41.40
64	GCA_025187385.1	Streptococcus thermophilus	CIRM-BIA 19	SAMN10365641	1963	France	-	410	0	25	33	41.40
65	GCA_029866985.1	Streptococcus thermophilus	DGCC7710	SAMN32348018	2015-10-09	USA:Georgia	-	410	0	25	29	38.29
66	GCA_045159845.1	Streptococcus thermophilus	4134	SAMN16933232	1996	Ireland	-	410	0	25	29	38.29
67	GCA_903886075.1	Streptococcus thermophilus	-	SAMEA6957287	1963	France	-	410	0	25	29	38.29
68	GCA_001008015.1	Streptococcus thermophilus	MN-BM-A02	SAMN03325854	2008	China: Dali region, Yunnan	-	411	0	25	29	38.29
69	GCA_001306395.1	Streptococcus thermophilus	C106	SAMN03801559	2010-07-29	Ireland: Cork Farmers Market	-	411	0	25	33	41.40
70	GCA_001855705.1	Streptococcus thermophilus	ND07	SAMN05357478	2005	China:Tianjun County, Qinhai Province	-	411	0	25	29	38.29
71	GCA_013307185.1	Streptococcus thermophilus	CS5	SAMN08295147	2013	China	-	411	0	25	29	38.29
72	GCA_013307285.1	Streptococcus thermophilus	CS18	SAMN09635157	2014	China	-	411	0	25	29	38.29
73	GCA_020075925.1	Streptococcus thermophilus	DS14_14	SAMN06464115	2016-07-27	USA:MD	Homo sapiens	411	0	25	33	41.40
74	GCA_023006585.1	Streptococcus thermophilus	ST16	SAMN24807002	2019	Canada:Ottawa	-	411	0	25	32	40.61
75	GCA_042187285.1	Streptococcus thermophilus	S24729	SAMN18490523	2019	Switzerland	-	411	0	28	32	42.52
76	GCA_000698885.1	Streptococcus thermophilus ASCC 1275	ASCC 1275	SAMN02770279	-	Australia: Werribee, Victoria	-	412	0	25	29	38.29
77	GCA_003130445.1	Streptococcus thermophilus	05-34	SAMN09112352	2010	China: Tibet	-	412	0	25	33	41.40
78	GCA_041514325.1	Streptococcus thermophilus	S24730	SAMN18478706	2019	Switzerland	-	412	0	28	28	39.60
79	GCA_023207975.1	Streptococcus thermophilus	CS6	SAMN14524728	2013-10-10	China	-	413	0	25	29	38.29
80	GCA_030846755.1	Streptococcus thermophilus	CICC 20372	SAMN36973155	2006-03-31	China: Inner Mongolia	-	414	0	25	29	38.29
81	GCA_001663795.1	Streptococcus thermophilus	KLDS SM	SAMN05226830	-	China: Inner Mongolia	-	417	0	25	29	38.29
82	GCA_041512205.1	Streptococcus thermophilus	S24745	SAMN18478714	2019	Switzerland	-	418	0	25	29	38.29
83	GCA_042187225.1	Streptococcus thermophilus	S24744	SAMN18490526	2019	Switzerland	-	419	0	25	33	41.40
84	GCA_017360165.1	Streptococcus thermophilus	13499	SAMN15923544	1984	Switzerland	-	421	0	25	29	38.29
85	GCA_017367115.1	Streptococcus thermophilus	13499c1	SAMN15923542	1984	Switzerland	-	421	0	25	33	41.40
86	GCA_039783405.1	Streptococcus thermophilus	ST19	SAMN16933243	1995	Ireland	-	421	0	19	29	34.67
87	GCA_017360085.1	Streptococcus thermophilus	24738	SAMN15923547	2019	Switzerland	-	422	0	25	28	37.54
88	GCA_017367015.1	Streptococcus thermophilus	S50	SAMN15923553	2019	Switzerland	-	423	0	25	33	41.40
89	GCA_017359885.1	Streptococcus thermophilus	24740	SAMN15923549	2019	Switzerland	-	424	0	25	29	38.29
90	GCA_017367085.1	Streptococcus thermophilus	13499c2	SAMN15923543	1984	Switzerland	-	424	0	25	33	41.40
91	GCA_019449675.1	Streptococcus thermophilus	Vach57	SAMN19116181	2020-11-09	Ireland	-	426	0	23	33	40.22
92	GCA_034044695.1	Streptococcus thermophilus	KF8	SAMN38411847	2022-09-10	Russia: Moscow	-	428	0	27	33	42.64
93	GCA_042187335.1	Streptococcus thermophilus	S24727	SAMN18490522	2019	Switzerland	-	432	0	26	33	42.01
94	GCA_017359825.1	Streptococcus thermophilus	24853	SAMN15923550	2019	Switzerland	-	433	0	25	29	38.29
95	GCA_017367285.1	Streptococcus thermophilus	13492	SAMN15923535	1984	Switzerland	-	433	0	25	32	40.61
96	GCA_017367305.1	Streptococcus thermophilus	13493	SAMN15923536	1984	Switzerland	-	433	0	25	32	40.61
97	GCA_017367345.1	Streptococcus thermophilus	13491	SAMN15923534	1984	Switzerland	-	433	0	25	32	40.61
98	GCA_022509625.1	Streptococcus thermophilus	QAUSTN63	SAMN22187333	2018	-	-	433	0	25	32	40.61
99	GCA_041514335.1	Streptococcus thermophilus	S24728	SAMN18478705	2019	Switzerland	-	433	0	26	28	38.21
100	GCA_017360245.1	Streptococcus thermophilus	13498	SAMN15923541	1984	Switzerland	-	434	0	25	28	37.54