Rank	Genome ID	Species	Strain	BioSample ID	Date	Location	Host	Allelic distance	ARGs	VFs	PGs	PPRS
1	GCA_003177075.1	Lacticaseibacillus paracasei	EG9	SAMN09239981	2012	Japan: Ibaraki	-	0	0	0	1	1.00
2	GCA_039566755.1	Lacticaseibacillus paracasei	Z34	SAMN41162779	2022-10-11	Slovakia	-	112	0	0	2	2.00
3	GCA_003346025.1	Lacticaseibacillus paracasei	KMB_622	SAMN09398954	2008	Slovakia	-	138	0	0	2	2.00
4	GCA_047946965.1	Lacticaseibacillus paracasei	XM-38	SAMN30660290	2017-06-01	China:Inner Mongolia	-	181	0	0	1	1.00
5	GCA_003712585.1	Lacticaseibacillus paracasei	FAM18172	SAMN04088876	2003	Switzerland	-	208	0	0	2	2.00
6	GCA_035021805.1	Lacticaseibacillus paracasei	SRX10	SAMN38318108	2019	Greece: Attiki	-	274	0	0	2	2.00
7	GCA_000409935.1	Lacticaseibacillus paracasei subsp. paracasei Lpp120	Lpp120	SAMN02469723	2003	-	-	308	0	0	2	2.00
8	GCA_003712325.1	Lacticaseibacillus paracasei	FAM18123	SAMN04088867	2003	Switzerland	-	322	0	0	2	2.00
9	GCA_023375875.1	Lacticaseibacillus paracasei	SP5	SAMN25227086	2018	Greece: Orestiada	-	328	0	0	2	2.00
10	GCA_039631115.1	Lacticaseibacillus paracasei	L17	SAMN41249976	2023-05-30	Slovakia	-	332	0	0	2	2.00
11	GCA_039631235.1	Lacticaseibacillus paracasei	L18	SAMN41249977	2023-05-30	Slovakia	-	332	0	0	2	2.00
12	GCA_039631055.1	Lacticaseibacillus paracasei	B19	SAMN41249973	2023-04-25	Slovakia	-	335	0	0	2	2.00
13	GCA_039631165.1	Lacticaseibacillus paracasei	B25	SAMN41249975	2023-04-25	Slovakia	-	335	0	0	2	2.00
14	GCA_039631215.1	Lacticaseibacillus paracasei	B20	SAMN41249974	2023-04-25	Slovakia	-	335	0	0	2	2.00
15	GCA_039631065.1	Lacticaseibacillus paracasei	B18	SAMN41249972	2023-04-25	Slovakia	-	337	0	0	2	2.00
16	GCA_030361125.1	Lacticaseibacillus paracasei	TOM.15.25	SAMN35776887	2021-11	Russia: Primorsky Krai	-	364	0	0	2	2.00
17	GCA_003712265.1	Lacticaseibacillus paracasei	FAM18110	SAMN04088863	2003	Switzerland	-	372	0	0	2	2.00
18	GCA_003712705.1	Lacticaseibacillus paracasei	FAM22279	SAMN04088884	-	Switzerland	-	374	0	0	2	2.00
19	GCA_040267725.1	Lacticaseibacillus paracasei	TCI727	SAMN41829189	2020-05-01	Taiwan:Taipei	-	378	0	0	1	1.00
20	GCA_039566645.1	Lacticaseibacillus paracasei	A191	SAMN41162755	2007	Slovakia	-	388	0	0	2	2.00
21	GCA_010363715.1	Lacticaseibacillus paracasei	D10-4	SAMN13943411	2018-01-10	USA	Homo sapiens	389	0	0	2	2.00
22	GCA_024125225.1	Lacticaseibacillus paracasei	NB2B-AER-MRS-02	SAMN28102056	2016-04	-	Homo sapiens	389	0	0	1	1.00
23	GCA_028321965.1	Lacticaseibacillus paracasei	1001216st1_C7_1001216I_160404	SAMN31322631	2016-04-04	USA	Homo sapiens	389	0	0	2	2.00
24	GCA_028322025.1	Lacticaseibacillus paracasei	1001216st1_H7_1001713B170131_170501	SAMN31322633	2017-05-01	USA	Homo sapiens	389	0	0	2	2.00
25	GCA_028322845.1	Lacticaseibacillus paracasei	1001216st1_D9_D55t1_190419	SAMN31322632	2019-04-19	USA	Homo sapiens	389	0	0	2	2.00
26	GCA_028322955.1	Lacticaseibacillus paracasei	1001216st1_B6_D55t1_190419	SAMN31322630	2019-04-19	USA	Homo sapiens	389	0	0	2	2.00
27	GCA_040093155.1	Lacticaseibacillus paracasei	CLA-AA-H40	SAMN40631522	2019-07-25	Germany:Aachen	Homo sapiens	389	0	0	2	2.00
28	GCA_025211235.1	Lacticaseibacillus paracasei	1017	SAMN10365678	2014	Ethiopia	-	410	0	0	2	2.00
29	GCA_000309705.1	Lacticaseibacillus paracasei	UCD174	SAMN02472002	-	USA: California	-	425	0	0	2	2.00
30	GCA_000410315.1	Lacticaseibacillus paracasei subsp. paracasei Lpp14	Lpp14	SAMN02469711	1989	-	-	425	0	0	2	2.00
31	GCA_003712625.1	Lacticaseibacillus paracasei	FAM19404	SAMN04088880	1990	Switzerland	-	439	0	0	2	2.00
32	GCA_004167215.1	Lacticaseibacillus paracasei	co_0103	SAMN10239551	2015-01	USA: Cambridge	Homo sapiens	448	1	2	2	3.00
33	GCA_009679435.1	Lacticaseibacillus paracasei	BIOML-A3	SAMN11946116	2015-12-09	USA:Boston	Homo sapiens	448	0	0	2	2.00
34	GCA_009679495.1	Lacticaseibacillus paracasei	BIOML-A2	SAMN11946115	2015-12-09	USA:Boston	Homo sapiens	448	1	2	2	3.00
35	GCA_009679505.1	Lacticaseibacillus paracasei	BIOML-A1	SAMN11946114	2015-12-09	USA:Boston	Homo sapiens	448	0	0	2	2.00
36	GCA_019641395.1	Lacticaseibacillus paracasei	LB113R	SAMN20672827	2018	Denmark	-	448	0	0	2	2.00
37	GCA_026967095.1	Lacticaseibacillus paracasei	Lpc_yogurt_C5	SAMN32062184	2021-07-27	USA:Chicago	-	448	0	0	2	2.00
38	GCA_026967175.1	Lacticaseibacillus paracasei	Lpc_yogurt_C3	SAMN32062182	2021-07-27	USA:Chicago	-	448	0	0	3	3.00
39	GCA_026967235.1	Lacticaseibacillus paracasei	Lpc_yogurt_C1	SAMN32062180	2021-07-27	USA:Chicago	-	448	0	0	2	2.00
40	GCA_028322925.1	Lacticaseibacillus paracasei	1001217st1_H10_1001216I_160404	SAMN31322636	2016-04-04	USA	Homo sapiens	448	0	0	2	2.00
41	GCA_002027405.1	Lacticaseibacillus paracasei	W16	SAMN06479973	2012-03	China: Nanchang	-	450	0	0	2	2.00
42	GCA_032466015.1	Lacticaseibacillus paracasei	LMG 19719	SAMN37405140	1999	Denmark	-	451	0	0	1	1.00
43	GCA_009679455.1	Lacticaseibacillus paracasei	BIOML-A4	SAMN11946117	2015-12-09	USA:Boston	Homo sapiens	456	0	0	2	2.00
44	GCA_028878255.1	Lacticaseibacillus paracasei	I2	SAMN23708201	2012-01-30	Italy	-	462	0	0	2	2.00
45	GCA_039838545.1	Lacticaseibacillus paracasei	1001217st1_G4_1001217B_191108	SAMN31322635	2019-11-08	USA	Homo sapiens	462	0	0	2	2.00
46	GCA_001436385.1	Lacticaseibacillus paracasei subsp. paracasei ATCC 25302 = DSM 5622 = JCM 8130	DSM 5622	SAMN02369433	1989	-	-	463	0	0	2	2.00
47	GCA_001514415.1	Lacticaseibacillus paracasei	KL1	SAMN04378089	2006-03	China:Jilin	-	463	0	0	1	1.00
48	GCA_003712535.1	Lacticaseibacillus paracasei	FAM18175	SAMN04088877	2003	Switzerland	-	463	0	0	2	2.00
49	GCA_007989125.1	Lacticaseibacillus paracasei subsp. paracasei	-	SAMD00166241	-	-	-	463	0	0	2	2.00
50	GCA_000159495.1	Lacticaseibacillus paracasei subsp. paracasei ATCC 25302 = DSM 5622 = JCM 8130	ATCC 25302	SAMN00001470	-	-	Homo sapiens	464	0	0	2	2.00
51	GCA_000829035.1	Lacticaseibacillus paracasei subsp. paracasei	-	SAMD00010723	-	-	-	464	0	0	1	1.00
52	GCA_004354655.1	Lacticaseibacillus paracasei subsp. paracasei	ATCC 25302	SAMN08555498	2017	Denmark	-	464	0	0	2	2.00
53	GCA_013867595.1	Lacticaseibacillus paracasei	s-16	SAMN15579850	2020-07-20	-	-	464	0	0	2	2.00
54	GCA_018286435.1	Lacticaseibacillus paracasei subsp. tolerans	2A	SAMN18869149	2014-03-31	USA	-	465	0	0	1	1.00
55	GCA_002120125.1	Lacticaseibacillus paracasei	HZ-1	SAMN05954276	2012-06	China: Tianjin	-	469	0	0	2	2.00
56	GCA_030361225.1	Lacticaseibacillus paracasei	TOM.262	SAMN35776883	2022-04	Russia: North Ossetia	-	469	0	0	2	2.00
57	GCA_000014525.1	Lacticaseibacillus paracasei ATCC 334	ATCC 334	SAMN02598528	-	-	-	470	0	0	1	1.00
58	GCA_039838525.1	Lacticaseibacillus paracasei	1001217st1_A4_1001217B_191108	SAMN31322634	2019-11-08	USA	Homo sapiens	472	0	0	2	2.00
59	GCA_003712425.1	Lacticaseibacillus paracasei	FAM18124	SAMN04088868	2003	Switzerland	-	480	0	0	2	2.00
60	GCA_003712445.1	Lacticaseibacillus paracasei	FAM18129	SAMN04088870	2003	Switzerland	-	480	0	0	2	2.00
61	GCA_016887835.1	Lacticaseibacillus paracasei	2333	SAMN17562094	2011-09-29	Italy	-	484	0	0	2	2.00
62	GCA_000409855.1	Lacticaseibacillus paracasei subsp. paracasei Lpp122	Lpp122	SAMN02469705	2003	-	-	488	0	0	2	2.00
63	GCA_003712835.1	Lacticaseibacillus paracasei	FAM8407	SAMN04088897	-	Switzerland	-	489	0	0	2	2.00
64	GCA_039838565.1	Lacticaseibacillus paracasei	1001217st1_H5_1001217B_191108	SAMN31322637	2019-11-08	USA	Homo sapiens	496	0	0	2	2.00
65	GCA_002027415.1	Lacticaseibacillus paracasei	W14	SAMN06480069	2012-03	China: Nanchang	-	512	0	0	2	2.00
66	GCA_003545945.1	Lacticaseibacillus paracasei	TJB4	SAMN09604022	2014-09-01	Tajikistan	-	533	0	0	2	2.00
67	GCA_000582665.1	Lacticaseibacillus paracasei N1115	N1115	SAMN03081525	-	China: Inner Mongolia	-	535	0	1	1	1.41
68	GCA_003712925.1	Lacticaseibacillus paracasei	FAM18126	SAMN04088869	2003	Switzerland	-	535	0	0	2	2.00
69	GCA_003712295.1	Lacticaseibacillus paracasei	FAM18099	SAMN04088859	2003	Switzerland	-	546	0	0	1	1.00
70	GCA_000410375.1	Lacticaseibacillus paracasei subsp. paracasei Lpp71	Lpp71	SAMN02469712	1999	-	-	554	0	0	1	1.00
71	GCA_025190825.1	Lacticaseibacillus paracasei	CIRM-BIA 2105	SAMN10365434	1993	Japan	-	555	0	0	2	2.00
72	GCA_020992235.1	Lacticaseibacillus paracasei subsp. paracasei	VKM B-1144	SAMN23026586	1952	USA: Illinois	Homo sapiens	558	0	0	1	1.00
73	GCA_039566245.1	Lacticaseibacillus paracasei	Z11	SAMN41162775	2022-10-11	Slovakia	-	564	0	0	2	2.00
74	GCA_039566565.1	Lacticaseibacillus paracasei	G185	SAMN41162749	2007	Slovakia	-	564	0	0	2	2.00
75	GCA_039566655.1	Lacticaseibacillus paracasei	G183	SAMN41162748	2007	Slovakia	-	564	0	0	2	2.00
76	GCA_000410255.1	Lacticaseibacillus paracasei subsp. paracasei Lpp7	Lpp7	SAMN02469713	1982	-	-	567	0	1	3	3.16
77	GCA_003346265.1	Lacticaseibacillus paracasei	KMB_616	SAMN09398948	2008	Slovakia	-	604	0	0	2	2.00
78	GCA_000410495.1	Lacticaseibacillus paracasei subsp. paracasei Lpp70	Lpp70	SAMN02641493	1999	-	-	605	0	1	2	2.24
79	GCA_000410275.1	Lacticaseibacillus paracasei subsp. paracasei CNCM I-4270	CNCM I-4270	SAMN02469729	2000	-	-	619	0	0	2	2.00
80	GCA_003712385.1	Lacticaseibacillus paracasei	FAM18119	SAMN04088865	2003	Switzerland	-	620	0	0	2	2.00
81	GCA_030361135.1	Lacticaseibacillus paracasei	TOM.264	SAMN35776884	2022-04	Russia: North Ossetia	-	620	0	0	2	2.00
82	GCA_030361345.1	Lacticaseibacillus paracasei	TOM.88	SAMN35776877	2022-04	Russia: Dagestan	-	620	0	0	2	2.00
83	GCA_024329455.1	Lacticaseibacillus paracasei	Kef-w14	SAMN18720967	2020-10-16	Singapore	-	622	0	0	2	2.00
84	GCA_014155825.1	Lacticaseibacillus paracasei	DPC 7150	SAMN12280511	2016-01-01	Ireland: Fermoy	-	625	0	0	2	2.00
85	GCA_000309725.1	Lacticaseibacillus paracasei	UW1	SAMN02472003	-	USA: Wisconsin	-	630	0	0	2	2.00
86	GCA_004368495.1	Lacticaseibacillus paracasei	INF 456	SAMN03290701	2000	Norway	-	637	0	0	2	2.00
87	GCA_009834405.1	Lacticaseibacillus paracasei	TD 062	SAMN12792675	2015-09-29	China:Tibeta	-	637	0	1	1	1.41
88	GCA_004368475.1	Lacticaseibacillus paracasei	INF 10	SAMN03290702	2000	Norway	-	638	0	0	2	2.00
89	GCA_044905105.1	Lacticaseibacillus paracasei	E	SAMN44286705	-	-	-	638	0	0	1	1.00
90	GCA_003712395.1	Lacticaseibacillus paracasei	FAM18113	SAMN04088864	2003	Switzerland	-	640	0	0	2	2.00
91	GCA_003712875.1	Lacticaseibacillus paracasei	FAM6165	SAMN04088892	-	Switzerland	-	640	0	0	2	2.00
92	GCA_025190775.1	Lacticaseibacillus paracasei	CIRM-BIA 1440	SAMN10365437	1980	France	-	640	0	0	2	2.00
93	GCA_003712685.1	Lacticaseibacillus paracasei	FAM22278	SAMN04088883	-	Switzerland	-	641	0	0	2	2.00
94	GCA_018966985.1	Lacticaseibacillus paracasei	MA2	SAMN19670536	2019-12-08	South Africa: Durban	-	641	0	0	2	2.00
95	GCA_000410155.1	Lacticaseibacillus paracasei subsp. paracasei Lpp22	Lpp22	SAMN02469708	1987	-	-	642	0	0	2	2.00
96	GCA_003346015.1	Lacticaseibacillus paracasei	KMB_623	SAMN09398955	2008	Slovakia	-	642	0	0	2	2.00
97	GCA_003712275.1	Lacticaseibacillus paracasei	FAM18105	SAMN04088861	2003	Switzerland	-	642	0	0	2	2.00
98	GCA_003712345.1	Lacticaseibacillus paracasei	FAM18121	SAMN04088866	2003	Switzerland	-	642	0	0	2	2.00
99	GCA_003712355.1	Lacticaseibacillus paracasei	FAM18101	SAMN04088860	2003	Switzerland	-	642	0	0	2	2.00
100	GCA_003712455.1	Lacticaseibacillus paracasei	FAM18132	SAMN04088871	2003	Switzerland	-	642	0	0	2	2.00