GCA_003203815.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaPIFONMJO_140 (original name was: gnl|Prokka|PIFONMJO_140)

Region	Type	From	To	Most similar known cluster		Similarity
Region 140.1	NRPS	1	3,880

gnlProkkaPIFONMJO_196 (original name was: gnl|Prokka|PIFONMJO_196)

Region	Type	From	To	Most similar known cluster		Similarity
Region 196.1	arylpolyene	1	1,723

Region	Type	From	To	Most similar known cluster	Similarity
Region 140.1	NRPS	1	3,880
Region 196.1	arylpolyene	1	1,723

Compact view

gnlProkkaPIFONMJO_140 - Region 1 - NRPS

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Location: 1 - 3,880 nt. (total: 3,880 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 3880:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Ala)

Direct lookup in NORINE database: strict or relaxed

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NRPS/PKS substrate predictions

ctg140_1

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AMP-binding (8..390): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVTSMALVYK
Nearest Stachelhaus code(s):: Ala DVFSVALVYK (71% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaPIFONMJO_196 - Region 1 - arylpolyene