GCA_003324115.1 - 6 region(s)

Identified primary metabolite regions

c00004_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_12)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Rnf_complex	E-MGC	14,568	39,626	Rnf complex C. sporogenes	RNF	83%
Region 4.2	Pyruvate2acetate-formate	SCFA	58,500	81,491	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00005_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_13)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Others_HGD_unassigned	Putative	58,893	90,314

c00022_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_30)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	acetate2butyrate	SCFA	45,091	71,334	Acetate to butyrate C. sporogenes	BUT	100%

c00033_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_41)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	Putrescine2spermidine	Aliphatic_amine	1,443	25,683	Arginine2putrescine R. gnavus	PUTR	100%

c00064_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_83)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 64.1	TPP_AA_metabolism	Putative	15,056	43,726	Threonine to propionate E. coli	PROP	20%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_5); c00002_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_8); c00003_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_10); c00006_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_14); c00007_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_15); c00008_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_16); c00009_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_17); c00010_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_18); c00011_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_19); c00012_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_20); c00013_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_21); c00014_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_22); c00015_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_23); c00016_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_24); c00017_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_25); c00018_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_26); c00019_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_27); c00020_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_28); c00021_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_29); c00023_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_31); c00024_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_32); c00025_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_33); c00026_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_34); c00027_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_35); c00028_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_36); c00029_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_37); c00030_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_38); c00031_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_39); c00032_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_40); c00034_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_42); c00035_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_43); c00036_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_44); c00037_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_45); c00038_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_46); c00039_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_47); c00040_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_48); c00041_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_49); c00042_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_50); c00043_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_51); c00044_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_52); c00045_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_53); c00046_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_54); c00047_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_55); c00048_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_56); c00049_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_57); c00050_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_58); c00051_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_59); c00052_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_60); c00053_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_61); c00054_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_62); c00055_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_63); c00056_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_64); c00057_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_65); c00058_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_66); c00059_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_67); c00060_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_68); c00061_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_70); c00062_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_76); c00063_gnlPro.. (original name was: gnl|Prokka|IKPFODNH_79)

Compact view

c00004_gnlPro.. - Region 1 - Rnf_complex

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Location: 14,568 - 39,626 nt. (total: 25,059 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00004_gnlPro.. - Region 2 - Pyruvate2acetate-formate

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Location: 58,500 - 81,491 nt. (total: 22,992 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00005_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 58,893 - 90,314 nt. (total: 31,422 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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No matches found.

c00022_gnlPro.. - Region 1 - acetate2butyrate

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Location: 45,091 - 71,334 nt. (total: 26,244 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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c00033_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 1,443 - 25,683 nt. (total: 24,241 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00064_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 15,056 - 43,726 nt. (total: 28,671 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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