GCA_003436105.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaHGMEMGFC_2 (original name was: gnl|Prokka|HGMEMGFC_2)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	NRPS-like	21,973	64,984

gnlProkkaHGMEMGFC_19 (original name was: gnl|Prokka|HGMEMGFC_19)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	lanthipeptide-class-iv	110,403	133,060

Region	Type	From	To	Most similar known cluster	Similarity
Region 2.1	NRPS-like	21,973	64,984
Region 18.1	lanthipeptide-class-iv	110,403	133,060

No secondary metabolite regions were found in these records:: gnlProkkaHGMEMGFC_1 (original name was: gnl|Prokka|HGMEMGFC_1); gnlProkkaHGMEMGFC_3 (original name was: gnl|Prokka|HGMEMGFC_3); gnlProkkaHGMEMGFC_4 (original name was: gnl|Prokka|HGMEMGFC_4); gnlProkkaHGMEMGFC_5 (original name was: gnl|Prokka|HGMEMGFC_5); gnlProkkaHGMEMGFC_6 (original name was: gnl|Prokka|HGMEMGFC_6); gnlProkkaHGMEMGFC_7 (original name was: gnl|Prokka|HGMEMGFC_7); gnlProkkaHGMEMGFC_8 (original name was: gnl|Prokka|HGMEMGFC_8); gnlProkkaHGMEMGFC_9 (original name was: gnl|Prokka|HGMEMGFC_9); gnlProkkaHGMEMGFC_10 (original name was: gnl|Prokka|HGMEMGFC_10); gnlProkkaHGMEMGFC_11 (original name was: gnl|Prokka|HGMEMGFC_11); gnlProkkaHGMEMGFC_12 (original name was: gnl|Prokka|HGMEMGFC_12); gnlProkkaHGMEMGFC_13 (original name was: gnl|Prokka|HGMEMGFC_13); gnlProkkaHGMEMGFC_14 (original name was: gnl|Prokka|HGMEMGFC_14); gnlProkkaHGMEMGFC_15 (original name was: gnl|Prokka|HGMEMGFC_15); gnlProkkaHGMEMGFC_16 (original name was: gnl|Prokka|HGMEMGFC_16); gnlProkkaHGMEMGFC_18 (original name was: gnl|Prokka|HGMEMGFC_18); gnlProkkaHGMEMGFC_20 (original name was: gnl|Prokka|HGMEMGFC_20); gnlProkkaHGMEMGFC_21 (original name was: gnl|Prokka|HGMEMGFC_21); gnlProkkaHGMEMGFC_22 (original name was: gnl|Prokka|HGMEMGFC_22); gnlProkkaHGMEMGFC_23 (original name was: gnl|Prokka|HGMEMGFC_23); gnlProkkaHGMEMGFC_24 (original name was: gnl|Prokka|HGMEMGFC_24)

Compact view

gnlProkkaHGMEMGFC_2 - Region 1 - NRPS-like

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Location: 21,973 - 64,984 nt. (total: 43,012 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 21972 - 64984:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg2_28

AMP-binding (14..381): X

nrpys: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DFFTIGIIYK
Nearest Stachelhaus code(s):: Ile DFWNIGIIYK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaHGMEMGFC_19 - Region 1 - lanthipeptide-class-iv