GCA_003436955.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaPBJOBDCK_1 (original name was: gnl|Prokka|PBJOBDCK_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	NRPS-like	16,216	59,227
Region 1.2	lanthipeptide-class-iv	335,209	357,866

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	NRPS-like	16,216	59,227
Region 1.2	lanthipeptide-class-iv	335,209	357,866

No secondary metabolite regions were found in these records:: gnlProkkaPBJOBDCK_2 (original name was: gnl|Prokka|PBJOBDCK_2); gnlProkkaPBJOBDCK_3 (original name was: gnl|Prokka|PBJOBDCK_3); gnlProkkaPBJOBDCK_4 (original name was: gnl|Prokka|PBJOBDCK_4); gnlProkkaPBJOBDCK_5 (original name was: gnl|Prokka|PBJOBDCK_5); gnlProkkaPBJOBDCK_6 (original name was: gnl|Prokka|PBJOBDCK_6); gnlProkkaPBJOBDCK_7 (original name was: gnl|Prokka|PBJOBDCK_7); gnlProkkaPBJOBDCK_8 (original name was: gnl|Prokka|PBJOBDCK_8); gnlProkkaPBJOBDCK_9 (original name was: gnl|Prokka|PBJOBDCK_9); gnlProkkaPBJOBDCK_10 (original name was: gnl|Prokka|PBJOBDCK_10); gnlProkkaPBJOBDCK_11 (original name was: gnl|Prokka|PBJOBDCK_11); gnlProkkaPBJOBDCK_12 (original name was: gnl|Prokka|PBJOBDCK_12); gnlProkkaPBJOBDCK_13 (original name was: gnl|Prokka|PBJOBDCK_13); gnlProkkaPBJOBDCK_14 (original name was: gnl|Prokka|PBJOBDCK_14)

Compact view

gnlProkkaPBJOBDCK_1 - Region 1 - NRPS-like

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Location: 16,216 - 59,227 nt. (total: 43,012 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 16215 - 59227:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg1_29

AMP-binding (14..381): X

nrpys: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DFFTIGIIYK
Nearest Stachelhaus code(s):: Ile DFWNIGIIYK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaPBJOBDCK_1 - Region 2 - lanthipeptide-class-iv