GCA_003458215.1 - 8 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Rnf_complex	E-MGC	118,925	144,025	Rnf complex C. sporogenes	RNF	83%

c00003_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_3)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	TPP_AA_metabolism	Putative	85,301	111,902

c00007_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_7)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	TPP_fatty_acids	Putative	23,545	49,420
Region 7.2	Pyruvate2acetate-formate	SCFA	52,114	75,072	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00012_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_12)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	PFOR_II_pathway	SCFA	137,679	161,233	PFOR II pathway B. thetaiotaomicron	PFORII	100%
Region 12.2	succinate2propionate	SCFA	200,698	225,336	Succinate to propionate B. theta	PRO	66%

c00019_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_19)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	Fumarate2succinate	SCFA	12,668	36,087	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00023_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_23)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	porA	SCFA	82,976	105,900	porA C. sporogenes	POR	80%

No primary metabolite regions were found in these records:: c00002_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_2); c00004_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_4); c00005_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_5); c00006_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_6); c00008_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_8); c00009_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_9); c00010_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_10); c00011_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_11); c00013_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_13); c00014_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_14); c00015_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_15); c00016_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_16); c00017_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_17); c00018_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_18); c00020_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_20); c00021_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_21); c00022_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_22); c00024_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_24); c00025_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_25); c00026_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_26); c00027_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_27); c00028_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_28); c00029_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_29); c00030_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_30); c00031_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_31); c00032_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_32); c00033_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_33); c00034_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_34); c00035_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_35); c00036_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_36); c00037_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_37); c00038_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_38); c00039_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_39); c00040_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_40); c00041_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_41); c00042_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_42); c00043_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_43); c00044_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_44); c00045_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_45); c00046_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_46); c00047_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_47); c00048_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_48); c00049_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_49); c00050_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_50); c00051_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_51); c00052_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_52); c00053_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_53); c00054_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_54); c00055_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_55); c00056_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_56); c00057_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_57); c00058_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_58); c00059_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_59); c00060_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_60); c00061_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_61); c00062_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_62); c00063_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_63); c00064_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_64); c00065_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_65); c00066_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_66); c00067_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_67); c00068_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_68); c00069_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_69); c00070_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_70); c00071_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_71); c00072_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_72); c00073_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_73); c00074_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_74); c00075_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_75); c00076_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_78); c00077_gnlPro.. (original name was: gnl|Prokka|EMCNGKPK_89)

Compact view

c00001_gnlPro.. - Region 1 - Rnf_complex

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Location: 118,925 - 144,025 nt. (total: 25,101 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

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c00003_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 85,301 - 111,902 nt. (total: 26,602 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00007_gnlPro.. - Region 1 - TPP_fatty_acids

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Location: 23,545 - 49,420 nt. (total: 25,876 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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KnownClusterBlast

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No matches found.

c00007_gnlPro.. - Region 2 - Pyruvate2acetate-formate

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Location: 52,114 - 75,072 nt. (total: 22,959 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00012_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 137,679 - 161,233 nt. (total: 23,555 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00012_gnlPro.. - Region 2 - succinate2propionate

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Location: 200,698 - 225,336 nt. (total: 24,639 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00019_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 12,668 - 36,087 nt. (total: 23,420 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00023_gnlPro.. - Region 1 - porA

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Location: 82,976 - 105,900 nt. (total: 22,925 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

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regulatory genes

resistance genes

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