GCA_003458325.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaCJAEBKPM_1 (original name was: gnl|Prokka|CJAEBKPM_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	ranthipeptide	1,407	23,014
Region 1.2	RRE-containing	124,226	144,489

gnlProkkaCJAEBKPM_11 (original name was: gnl|Prokka|CJAEBKPM_11)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	NRPS,HR-T2PKS	253,417	338,797	leucomycin	Polyketide	3%

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	ranthipeptide	1,407	23,014
Region 1.2	RRE-containing	124,226	144,489
Region 10.1	NRPS,HR-T2PKS	253,417	338,797	leucomycin	Polyketide	3%

No secondary metabolite regions were found in these records:: gnlProkkaCJAEBKPM_2 (original name was: gnl|Prokka|CJAEBKPM_2); gnlProkkaCJAEBKPM_3 (original name was: gnl|Prokka|CJAEBKPM_3); gnlProkkaCJAEBKPM_4 (original name was: gnl|Prokka|CJAEBKPM_4); gnlProkkaCJAEBKPM_5 (original name was: gnl|Prokka|CJAEBKPM_5); gnlProkkaCJAEBKPM_6 (original name was: gnl|Prokka|CJAEBKPM_6); gnlProkkaCJAEBKPM_7 (original name was: gnl|Prokka|CJAEBKPM_7); gnlProkkaCJAEBKPM_8 (original name was: gnl|Prokka|CJAEBKPM_8); gnlProkkaCJAEBKPM_9 (original name was: gnl|Prokka|CJAEBKPM_9); gnlProkkaCJAEBKPM_12 (original name was: gnl|Prokka|CJAEBKPM_12); gnlProkkaCJAEBKPM_13 (original name was: gnl|Prokka|CJAEBKPM_13); gnlProkkaCJAEBKPM_14 (original name was: gnl|Prokka|CJAEBKPM_14); gnlProkkaCJAEBKPM_15 (original name was: gnl|Prokka|CJAEBKPM_15); gnlProkkaCJAEBKPM_16 (original name was: gnl|Prokka|CJAEBKPM_16); gnlProkkaCJAEBKPM_17 (original name was: gnl|Prokka|CJAEBKPM_17); gnlProkkaCJAEBKPM_18 (original name was: gnl|Prokka|CJAEBKPM_18)

Compact view

gnlProkkaCJAEBKPM_1 - Region 1 - ranthipeptide

Download region GenBank file

Download region SVG

Location: 1,407 - 23,014 nt. (total: 21,608 nt) Show pHMM detection rules used

Region on contig edge.

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or (YcaO or TIGR03604))))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaCJAEBKPM_1 - Region 2 - RRE-containing

Download region GenBank file

Download region SVG

Location: 124,226 - 144,489 nt. (total: 20,264 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaCJAEBKPM_11 - Region 1 - HR-T2PKS,NRPS

Download region GenBank file

Download region SVG

Location: 253,417 - 338,797 nt. (total: 85,381 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))
HR-T2PKS: (hr-t2pks-ksa and (t2fas or APE_KS2 or ketoacyl-synt))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 253416 - 338797:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Ile - X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 253416 - 300049:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Ile - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg10_284

Search NORINE for peptide: strict or relaxed

AMP-binding (457..845): Ile

nrpys: Ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DASFLGGVYK
Nearest Stachelhaus code(s):: Ile DALFMGGVYK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)

AMP-binding (1479..1869): X

nrpys: Asp, Asn, Glu, Gln, Aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DMKNLGTVSK
Nearest Stachelhaus code(s):: Asp DMKDLGMVDK (53% 8Å match)
Stachelhaus code match:: 70% (weak)