GCA_003467805.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaNDKDDMJP_6 (original name was: gnl|Prokka|NDKDDMJP_6)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	cyclic-lactone-autoinducer	1	13,120

gnlProkkaNDKDDMJP_12 (original name was: gnl|Prokka|NDKDDMJP_12)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	ranthipeptide	355,735	377,400

gnlProkkaNDKDDMJP_34 (original name was: gnl|Prokka|NDKDDMJP_34)

Region	Type	From	To	Most similar known cluster		Similarity
Region 34.1	cyclic-lactone-autoinducer,RRE-containing	181,122	203,295

gnlProkkaNDKDDMJP_45 (original name was: gnl|Prokka|NDKDDMJP_45)

Region	Type	From	To	Most similar known cluster		Similarity
Region 40.1	cyclic-lactone-autoinducer	86,770	106,110

Region	Type	From	To	Similarity
Region 6.1	cyclic-lactone-autoinducer	1	13,120
Region 12.1	ranthipeptide	355,735	377,400
Region 34.1	cyclic-lactone-autoinducer,RRE-containing	181,122	203,295
Region 40.1	cyclic-lactone-autoinducer	86,770	106,110

No secondary metabolite regions were found in these records:: gnlProkkaNDKDDMJP_1 (original name was: gnl|Prokka|NDKDDMJP_1); gnlProkkaNDKDDMJP_2 (original name was: gnl|Prokka|NDKDDMJP_2); gnlProkkaNDKDDMJP_3 (original name was: gnl|Prokka|NDKDDMJP_3); gnlProkkaNDKDDMJP_4 (original name was: gnl|Prokka|NDKDDMJP_4); gnlProkkaNDKDDMJP_5 (original name was: gnl|Prokka|NDKDDMJP_5); gnlProkkaNDKDDMJP_7 (original name was: gnl|Prokka|NDKDDMJP_7); gnlProkkaNDKDDMJP_8 (original name was: gnl|Prokka|NDKDDMJP_8); gnlProkkaNDKDDMJP_9 (original name was: gnl|Prokka|NDKDDMJP_9); gnlProkkaNDKDDMJP_10 (original name was: gnl|Prokka|NDKDDMJP_10); gnlProkkaNDKDDMJP_11 (original name was: gnl|Prokka|NDKDDMJP_11); gnlProkkaNDKDDMJP_13 (original name was: gnl|Prokka|NDKDDMJP_13); gnlProkkaNDKDDMJP_14 (original name was: gnl|Prokka|NDKDDMJP_14); gnlProkkaNDKDDMJP_15 (original name was: gnl|Prokka|NDKDDMJP_15); gnlProkkaNDKDDMJP_16 (original name was: gnl|Prokka|NDKDDMJP_16); gnlProkkaNDKDDMJP_17 (original name was: gnl|Prokka|NDKDDMJP_17); gnlProkkaNDKDDMJP_18 (original name was: gnl|Prokka|NDKDDMJP_18); gnlProkkaNDKDDMJP_19 (original name was: gnl|Prokka|NDKDDMJP_19); gnlProkkaNDKDDMJP_20 (original name was: gnl|Prokka|NDKDDMJP_20); gnlProkkaNDKDDMJP_21 (original name was: gnl|Prokka|NDKDDMJP_21); gnlProkkaNDKDDMJP_22 (original name was: gnl|Prokka|NDKDDMJP_22); gnlProkkaNDKDDMJP_23 (original name was: gnl|Prokka|NDKDDMJP_23); gnlProkkaNDKDDMJP_24 (original name was: gnl|Prokka|NDKDDMJP_24); gnlProkkaNDKDDMJP_25 (original name was: gnl|Prokka|NDKDDMJP_25); gnlProkkaNDKDDMJP_26 (original name was: gnl|Prokka|NDKDDMJP_26); gnlProkkaNDKDDMJP_27 (original name was: gnl|Prokka|NDKDDMJP_27); gnlProkkaNDKDDMJP_28 (original name was: gnl|Prokka|NDKDDMJP_28); gnlProkkaNDKDDMJP_29 (original name was: gnl|Prokka|NDKDDMJP_29); gnlProkkaNDKDDMJP_30 (original name was: gnl|Prokka|NDKDDMJP_30); gnlProkkaNDKDDMJP_31 (original name was: gnl|Prokka|NDKDDMJP_31); gnlProkkaNDKDDMJP_32 (original name was: gnl|Prokka|NDKDDMJP_32); gnlProkkaNDKDDMJP_33 (original name was: gnl|Prokka|NDKDDMJP_33); gnlProkkaNDKDDMJP_35 (original name was: gnl|Prokka|NDKDDMJP_35); gnlProkkaNDKDDMJP_36 (original name was: gnl|Prokka|NDKDDMJP_36); gnlProkkaNDKDDMJP_42 (original name was: gnl|Prokka|NDKDDMJP_42); gnlProkkaNDKDDMJP_43 (original name was: gnl|Prokka|NDKDDMJP_43); gnlProkkaNDKDDMJP_44 (original name was: gnl|Prokka|NDKDDMJP_44); gnlProkkaNDKDDMJP_46 (original name was: gnl|Prokka|NDKDDMJP_46)

Compact view

gnlProkkaNDKDDMJP_6 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 13,120 nt. (total: 13,120 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaNDKDDMJP_12 - Region 1 - ranthipeptide

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Location: 355,735 - 377,400 nt. (total: 21,666 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or (YcaO or TIGR03604))))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaNDKDDMJP_34 - Region 1 - RRE-containing,cyclic-lactone-autoinducer

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Location: 181,122 - 203,295 nt. (total: 22,174 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaNDKDDMJP_45 - Region 1 - cyclic-lactone-autoinducer

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Location: 86,770 - 106,110 nt. (total: 19,341 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.