Select genomic region:
Overview
1.1
3.1
6.1
11.1
12.1
19.1
27.1

### Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_1)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 1.1 | acetate2butyrate | SCFA | 1 | 16,680 | Acetate to butyrate C. sporogenes | BUT | 83%

c00003_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_3)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 3.1 | Putrescine2spermidine | Aliphatic_amine | 120,355 | 141,035 | Putrescine2spermidine E. rectale | SPRM | 100%

c00006_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_6)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 6.1 | porA | SCFA | 24,670 | 48,139 |

c00011_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_11)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 11.1 | Pyruvate2acetate-formate | SCFA | 50,721 | 65,217 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%

c00012_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_12)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 12.1 | Rnf_complex,succinate2propionate | SCFA | 136,487 | 181,018 | Rnf complex C. sporogenes | RNF | 100%

c00019_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_19)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 19.1 | Others_HGD_unassigned | Putative | 15,721 | 39,567 |

c00027_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_27)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 27.1 | gallic_acid_met | Aromatic | 1 | 14,609 | Gallic acid degradation B. sp. KLE | GALL | 100%

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 1.1 | acetate2butyrate | SCFA | 1 | 16,680 | Acetate to butyrate C. sporogenes | BUT | 83%
Region 3.1 | Putrescine2spermidine | Aliphatic_amine | 120,355 | 141,035 | Putrescine2spermidine E. rectale | SPRM | 100%
Region 6.1 | porA | SCFA | 24,670 | 48,139 |
Region 11.1 | Pyruvate2acetate-formate | SCFA | 50,721 | 65,217 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%
Region 12.1 | Rnf_complex,succinate2propionate | SCFA | 136,487 | 181,018 | Rnf complex C. sporogenes | RNF | 100%
Region 19.1 | Others_HGD_unassigned | Putative | 15,721 | 39,567 |
Region 27.1 | gallic_acid_met | Aromatic | 1 | 14,609 | Gallic acid degradation B. sp. KLE | GALL | 100%

No primary metabolite regions were found in these records:
  c00002_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_2)
  c00004_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_5)
  c00007_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_10)
  c00013_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_15)
  c00016_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_18)
  c00020_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_26)
  c00028_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_32)
  c00033_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_33)
  c00034_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_34)
  c00035_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_44)
  c00045_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_45)
  c00046_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_47)
  c00048_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_51)
  c00052_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_54)
  c00055_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_55)
  c00056_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_56)
  c00057_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_66)
  c00059_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_67)
  c00060_gnlPro.. (original name was: gnl|Prokka|IIJCMEKJ_68)

Compact view
c00001_gnlPro.. - Region 1 - acetate2butyrate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 16,680 nt. (total: 16,680 nt) Show pHMM detection rules used
Region on contig edge.
acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00003_gnlPro.. - Region 1 - Putrescine2spermidine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 120,355 - 141,035 nt. (total: 20,681 nt) Show pHMM detection rules used
Region on contig edge.
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00006_gnlPro.. - Region 1 - porA
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 24,670 - 48,139 nt. (total: 23,470 nt) Show pHMM detection rules used
porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00011_gnlPro.. - Region 1 - Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 50,721 - 65,217 nt. (total: 14,497 nt) Show pHMM detection rules used
Region on contig edge.
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00012_gnlPro.. - Region 1 - Rnf_complex,succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 136,487 - 181,018 nt. (total: 44,532 nt) Show pHMM detection rules used
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00019_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 15,721 - 39,567 nt. (total: 23,847 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00027_gnlPro.. - Region 1 - gallic_acid_met
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 14,609 nt. (total: 14,609 nt) Show pHMM detection rules used
Region on contig edge.
gallic_acid_met: (minimum(1, [Flavoprotein, Semialdhyde_dh]) and gallic_acid)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.