GCA_003703875.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaKPPGMCDK_1 (original name was: gnl|Prokka|KPPGMCDK_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	hglE-KS	1	23,670

gnlProkkaKPPGMCDK_2 (original name was: gnl|Prokka|KPPGMCDK_2)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	arylpolyene	1	21,446

gnlProkkaKPPGMCDK_25 (original name was: gnl|Prokka|KPPGMCDK_25)

Region	Type	From	To	Most similar known cluster		Similarity
Region 23.1	RiPP-like	1	8,127

gnlProkkaKPPGMCDK_45 (original name was: gnl|Prokka|KPPGMCDK_45)

Region	Type	From	To	Most similar known cluster		Similarity
Region 39.1	T3PKS	82,208	123,365

Region	Type	From	To	Similarity
Region 1.1	hglE-KS	1	23,670
Region 2.1	arylpolyene	1	21,446
Region 23.1	RiPP-like	1	8,127
Region 39.1	T3PKS	82,208	123,365

Compact view

gnlProkkaKPPGMCDK_1 - Region 1 - hglE-KS

Download region GenBank file

Download region SVG

Location: 1 - 23,670 nt. (total: 23,670 nt) Show pHMM detection rules used

Region on contig edge.

hglE-KS: (hglE or hglD)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 23670:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg1_17

PKS_AT (25..314): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 58.3%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 39.1
Methoxymalonyl-CoA: 33.5
Methylmalonyl-CoA: 22.1
CHC-CoA: 15.3
Isobutyryl-CoA: 12.2
Propionyl-CoA: 11.9
Benzoyl-CoA: 11.8
inactive: 10.6
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Ethylmalonyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

gnlProkkaKPPGMCDK_2 - Region 1 - arylpolyene

Download region GenBank file

Download region SVG

Location: 1 - 21,446 nt. (total: 21,446 nt) Show pHMM detection rules used

Region on contig edge.

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg2_10

PKS_AT (5..284): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 66.7%

minowa: inactive

Prediction, score:

inactive: 30.8
Malonyl-CoA: 25.1
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Propionyl-CoA: 0.0
Methylmalonyl-CoA: 0.0
Methoxymalonyl-CoA: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

gnlProkkaKPPGMCDK_25 - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 1 - 8,127 nt. (total: 8,127 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaKPPGMCDK_45 - Region 1 - T3PKS

Download region GenBank file

Download region SVG

Location: 82,208 - 123,365 nt. (total: 41,158 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.