Rank	Genome ID	Species	Strain	BioSample ID	Date	Location	Host	Allelic distance	ARGs	VFs	PGs	PPRS
1	GCA_003712295.1	Lacticaseibacillus paracasei	FAM18099	SAMN04088859	2003	Switzerland	-	0	0	0	1	1.00
2	GCA_003712225.1	Lacticaseibacillus paracasei	FAM10859	SAMN04088858	-	Switzerland	-	442	0	0	2	2.00
3	GCA_029906315.1	Lacticaseibacillus paracasei subsp. paracasei	MI29	SAMN34105739	2022-09-01	South Korea	Homo sapiens	451	0	0	1	1.00
4	GCA_040267725.1	Lacticaseibacillus paracasei	TCI727	SAMN41829189	2020-05-01	Taiwan:Taipei	-	453	0	0	1	1.00
5	GCA_002813615.1	Lacticaseibacillus paracasei subsp. paracasei	TMW 1.1434	SAMN05356834	-	Germany	-	454	0	0	1	1.00
6	GCA_025190495.1	Lacticaseibacillus paracasei	CIRM-BIA 288	SAMN10365452	2008	France	-	457	0	0	2	2.00
7	GCA_002901165.3	Lacticaseibacillus paracasei subsp. paracasei	NTU 101	SAMN07445234	2013-09-16	Taiwan:Taipei	Homo sapiens	460	0	0	1	1.00
8	GCA_003712795.1	Lacticaseibacillus paracasei	FAM4067	SAMN04088889	1995	Switzerland	-	462	0	0	2	2.00
9	GCA_009739485.1	Lacticaseibacillus paracasei subsp. paracasei	IBB3423	SAMN07167770	2013-09-29	Poland	-	465	0	0	1	1.00
10	GCA_024717335.1	Lacticaseibacillus paracasei	VHProbi M56	SAMN27162336	2021-01-25	China:Qingdao	Homo sapiens	467	0	0	1	1.00
11	GCA_037966745.1	Lacticaseibacillus paracasei	ATA-LTC-Lp040802	SAMN40643417	2002-08-04	Turkey:Izmir	Homo sapiens	469	0	0	2	2.00
12	GCA_038025045.1	Lacticaseibacillus paracasei	ATA-LTC-Lp121000	SAMN40643419	2000-10-12	Turkey:Igdir	animal	469	0	0	2	2.00
13	GCA_040430295.1	Lacticaseibacillus paracasei	ATA-LTC-Lp041103	SAMN41784243	2003-11-04	Turkey: Krkkale, Hacbal	Animal	470	0	0	2	2.00
14	GCA_003712645.1	Lacticaseibacillus paracasei	FAM22276	SAMN04088881	1990	Switzerland	-	472	0	0	2	2.00
15	GCA_003712935.1	Lacticaseibacillus paracasei	FAM3248	SAMN04088887	1990	Switzerland	-	472	0	0	2	2.00
16	GCA_000958485.1	Lacticaseibacillus paracasei NRIC 1981	-	SAMD00000558	-	-	-	480	0	0	2	2.00
17	GCA_000410315.1	Lacticaseibacillus paracasei subsp. paracasei Lpp14	Lpp14	SAMN02469711	1989	-	-	481	0	0	2	2.00
18	GCA_000474615.1	Lacticaseibacillus paracasei	5b	SAMN02470054	-	-	-	485	0	0	2	2.00
19	GCA_002914885.1	Lacticaseibacillus paracasei	BP07	SAMN07187783	2017	Italy	-	486	0	0	2	2.00
20	GCA_000309765.1	Lacticaseibacillus paracasei	Lc-10	SAMN02472012	-	-	-	487	0	0	2	2.00
21	GCA_039566645.1	Lacticaseibacillus paracasei	A191	SAMN41162755	2007	Slovakia	-	528	0	0	2	2.00
22	GCA_003346025.1	Lacticaseibacillus paracasei	KMB_622	SAMN09398954	2008	Slovakia	-	545	0	0	2	2.00
23	GCA_003177075.1	Lacticaseibacillus paracasei	EG9	SAMN09239981	2012	Japan: Ibaraki	-	546	0	0	1	1.00
24	GCA_039566755.1	Lacticaseibacillus paracasei	Z34	SAMN41162779	2022-10-11	Slovakia	-	547	0	0	2	2.00
25	GCA_035021805.1	Lacticaseibacillus paracasei	SRX10	SAMN38318108	2019	Greece: Attiki	-	548	0	0	2	2.00
26	GCA_047946965.1	Lacticaseibacillus paracasei	XM-38	SAMN30660290	2017-06-01	China:Inner Mongolia	-	548	0	0	1	1.00
27	GCA_002120125.1	Lacticaseibacillus paracasei	HZ-1	SAMN05954276	2012-06	China: Tianjin	-	552	0	0	2	2.00
28	GCA_000014525.1	Lacticaseibacillus paracasei ATCC 334	ATCC 334	SAMN02598528	-	-	-	554	0	0	1	1.00
29	GCA_003712325.1	Lacticaseibacillus paracasei	FAM18123	SAMN04088867	2003	Switzerland	-	554	0	0	2	2.00
30	GCA_010363715.1	Lacticaseibacillus paracasei	D10-4	SAMN13943411	2018-01-10	USA	Homo sapiens	557	0	0	2	2.00
31	GCA_028321965.1	Lacticaseibacillus paracasei	1001216st1_C7_1001216I_160404	SAMN31322631	2016-04-04	USA	Homo sapiens	557	0	0	2	2.00
32	GCA_028322025.1	Lacticaseibacillus paracasei	1001216st1_H7_1001713B170131_170501	SAMN31322633	2017-05-01	USA	Homo sapiens	557	0	0	2	2.00
33	GCA_028322845.1	Lacticaseibacillus paracasei	1001216st1_D9_D55t1_190419	SAMN31322632	2019-04-19	USA	Homo sapiens	557	0	0	2	2.00
34	GCA_028322955.1	Lacticaseibacillus paracasei	1001216st1_B6_D55t1_190419	SAMN31322630	2019-04-19	USA	Homo sapiens	557	0	0	2	2.00
35	GCA_040093155.1	Lacticaseibacillus paracasei	CLA-AA-H40	SAMN40631522	2019-07-25	Germany:Aachen	Homo sapiens	557	0	0	2	2.00
36	GCA_024125225.1	Lacticaseibacillus paracasei	NB2B-AER-MRS-02	SAMN28102056	2016-04	-	Homo sapiens	558	0	0	1	1.00
37	GCA_003712625.1	Lacticaseibacillus paracasei	FAM19404	SAMN04088880	1990	Switzerland	-	563	0	0	2	2.00
38	GCA_004167215.1	Lacticaseibacillus paracasei	co_0103	SAMN10239551	2015-01	USA: Cambridge	Homo sapiens	564	1	2	2	3.00
39	GCA_009679435.1	Lacticaseibacillus paracasei	BIOML-A3	SAMN11946116	2015-12-09	USA:Boston	Homo sapiens	564	0	0	2	2.00
40	GCA_009679495.1	Lacticaseibacillus paracasei	BIOML-A2	SAMN11946115	2015-12-09	USA:Boston	Homo sapiens	564	1	2	2	3.00
41	GCA_009679505.1	Lacticaseibacillus paracasei	BIOML-A1	SAMN11946114	2015-12-09	USA:Boston	Homo sapiens	564	0	0	2	2.00
42	GCA_019641395.1	Lacticaseibacillus paracasei	LB113R	SAMN20672827	2018	Denmark	-	564	0	0	2	2.00
43	GCA_026967095.1	Lacticaseibacillus paracasei	Lpc_yogurt_C5	SAMN32062184	2021-07-27	USA:Chicago	-	564	0	0	2	2.00
44	GCA_026967175.1	Lacticaseibacillus paracasei	Lpc_yogurt_C3	SAMN32062182	2021-07-27	USA:Chicago	-	564	0	0	3	3.00
45	GCA_026967235.1	Lacticaseibacillus paracasei	Lpc_yogurt_C1	SAMN32062180	2021-07-27	USA:Chicago	-	564	0	0	2	2.00
46	GCA_028322925.1	Lacticaseibacillus paracasei	1001217st1_H10_1001216I_160404	SAMN31322636	2016-04-04	USA	Homo sapiens	564	0	0	2	2.00
47	GCA_003712585.1	Lacticaseibacillus paracasei	FAM18172	SAMN04088876	2003	Switzerland	-	568	0	0	2	2.00
48	GCA_039631115.1	Lacticaseibacillus paracasei	L17	SAMN41249976	2023-05-30	Slovakia	-	569	0	0	2	2.00
49	GCA_039631235.1	Lacticaseibacillus paracasei	L18	SAMN41249977	2023-05-30	Slovakia	-	569	0	0	2	2.00
50	GCA_009679455.1	Lacticaseibacillus paracasei	BIOML-A4	SAMN11946117	2015-12-09	USA:Boston	Homo sapiens	570	0	0	2	2.00
51	GCA_039631055.1	Lacticaseibacillus paracasei	B19	SAMN41249973	2023-04-25	Slovakia	-	571	0	0	2	2.00
52	GCA_039631065.1	Lacticaseibacillus paracasei	B18	SAMN41249972	2023-04-25	Slovakia	-	571	0	0	2	2.00
53	GCA_039631165.1	Lacticaseibacillus paracasei	B25	SAMN41249975	2023-04-25	Slovakia	-	571	0	0	2	2.00
54	GCA_039631215.1	Lacticaseibacillus paracasei	B20	SAMN41249974	2023-04-25	Slovakia	-	571	0	0	2	2.00
55	GCA_039838545.1	Lacticaseibacillus paracasei	1001217st1_G4_1001217B_191108	SAMN31322635	2019-11-08	USA	Homo sapiens	572	0	0	2	2.00
56	GCA_018286435.1	Lacticaseibacillus paracasei subsp. tolerans	2A	SAMN18869149	2014-03-31	USA	-	574	0	0	1	1.00
57	GCA_039838525.1	Lacticaseibacillus paracasei	1001217st1_A4_1001217B_191108	SAMN31322634	2019-11-08	USA	Homo sapiens	575	0	0	2	2.00
58	GCA_000409935.1	Lacticaseibacillus paracasei subsp. paracasei Lpp120	Lpp120	SAMN02469723	2003	-	-	577	0	0	2	2.00
59	GCA_030361225.1	Lacticaseibacillus paracasei	TOM.262	SAMN35776883	2022-04	Russia: North Ossetia	-	577	0	0	2	2.00
60	GCA_035330705.1	Lacticaseibacillus paracasei	S135-24W	SAMN38650142	2022	Taiwan	Homo sapiens	577	0	0	1	1.00
61	GCA_002406665.1	Lacticaseibacillus paracasei	B3	SAMN07665582	2016-11-07	Canada: Montreal, Quebec	-	578	0	0	2	2.00
62	GCA_039566565.1	Lacticaseibacillus paracasei	G185	SAMN41162749	2007	Slovakia	-	581	0	0	2	2.00
63	GCA_030361125.1	Lacticaseibacillus paracasei	TOM.15.25	SAMN35776887	2021-11	Russia: Primorsky Krai	-	582	0	0	2	2.00
64	GCA_039566655.1	Lacticaseibacillus paracasei	G183	SAMN41162748	2007	Slovakia	-	582	0	0	2	2.00
65	GCA_039566245.1	Lacticaseibacillus paracasei	Z11	SAMN41162775	2022-10-11	Slovakia	-	583	0	0	2	2.00
66	GCA_001514415.1	Lacticaseibacillus paracasei	KL1	SAMN04378089	2006-03	China:Jilin	-	584	0	0	1	1.00
67	GCA_003712265.1	Lacticaseibacillus paracasei	FAM18110	SAMN04088863	2003	Switzerland	-	584	0	0	2	2.00
68	GCA_003712245.1	Lacticaseibacillus paracasei	FAM18108	SAMN04088862	2003	Switzerland	-	587	0	0	2	2.00
69	GCA_003712705.1	Lacticaseibacillus paracasei	FAM22279	SAMN04088884	-	Switzerland	-	587	0	0	2	2.00
70	GCA_016887835.1	Lacticaseibacillus paracasei	2333	SAMN17562094	2011-09-29	Italy	-	589	0	0	2	2.00
71	GCA_003712425.1	Lacticaseibacillus paracasei	FAM18124	SAMN04088868	2003	Switzerland	-	594	0	0	2	2.00
72	GCA_003712445.1	Lacticaseibacillus paracasei	FAM18129	SAMN04088870	2003	Switzerland	-	594	0	0	2	2.00
73	GCA_025211235.1	Lacticaseibacillus paracasei	1017	SAMN10365678	2014	Ethiopia	-	594	0	0	2	2.00
74	GCA_032466015.1	Lacticaseibacillus paracasei	LMG 19719	SAMN37405140	1999	Denmark	-	594	0	0	1	1.00
75	GCA_003712665.1	Lacticaseibacillus paracasei	FAM22277	SAMN04088882	1996	Switzerland	-	595	0	0	2	2.00
76	GCA_002027415.1	Lacticaseibacillus paracasei	W14	SAMN06480069	2012-03	China: Nanchang	-	596	0	0	2	2.00
77	GCA_003712535.1	Lacticaseibacillus paracasei	FAM18175	SAMN04088877	2003	Switzerland	-	596	0	0	2	2.00
78	GCA_025190825.1	Lacticaseibacillus paracasei	CIRM-BIA 2105	SAMN10365434	1993	Japan	-	596	0	0	2	2.00
79	GCA_039838565.1	Lacticaseibacillus paracasei	1001217st1_H5_1001217B_191108	SAMN31322637	2019-11-08	USA	Homo sapiens	597	0	0	2	2.00
80	GCA_003712925.1	Lacticaseibacillus paracasei	FAM18126	SAMN04088869	2003	Switzerland	-	598	0	0	2	2.00
81	GCA_001436385.1	Lacticaseibacillus paracasei subsp. paracasei ATCC 25302 = DSM 5622 = JCM 8130	DSM 5622	SAMN02369433	1989	-	-	600	0	0	2	2.00
82	GCA_007989125.1	Lacticaseibacillus paracasei subsp. paracasei	-	SAMD00166241	-	-	-	600	0	0	2	2.00
83	GCA_034044075.1	Lacticaseibacillus paracasei	MP11A	SAMN37950489	2019-08-19	India: Manipur	-	600	0	0	1	1.00
84	GCA_000159495.1	Lacticaseibacillus paracasei subsp. paracasei ATCC 25302 = DSM 5622 = JCM 8130	ATCC 25302	SAMN00001470	-	-	Homo sapiens	601	0	0	2	2.00
85	GCA_000309705.1	Lacticaseibacillus paracasei	UCD174	SAMN02472002	-	USA: California	-	601	0	0	2	2.00
86	GCA_000409855.1	Lacticaseibacillus paracasei subsp. paracasei Lpp122	Lpp122	SAMN02469705	2003	-	-	601	0	0	2	2.00
87	GCA_000829035.1	Lacticaseibacillus paracasei subsp. paracasei	-	SAMD00010723	-	-	-	601	0	0	1	1.00
88	GCA_004354655.1	Lacticaseibacillus paracasei subsp. paracasei	ATCC 25302	SAMN08555498	2017	Denmark	-	601	0	0	2	2.00
89	GCA_013867595.1	Lacticaseibacillus paracasei	s-16	SAMN15579850	2020-07-20	-	-	601	0	0	2	2.00
90	GCA_023375875.1	Lacticaseibacillus paracasei	SP5	SAMN25227086	2018	Greece: Orestiada	-	601	0	0	2	2.00
91	GCA_028878255.1	Lacticaseibacillus paracasei	I2	SAMN23708201	2012-01-30	Italy	-	601	0	0	2	2.00
92	GCA_000582665.1	Lacticaseibacillus paracasei N1115	N1115	SAMN03081525	-	China: Inner Mongolia	-	602	0	1	1	1.41
93	GCA_002027405.1	Lacticaseibacillus paracasei	W16	SAMN06479973	2012-03	China: Nanchang	-	606	0	0	2	2.00
94	GCA_003367655.1	Lacticaseibacillus paracasei subsp. paracasei	KMB_598	SAMN09398938	2013	Slovakia	-	607	0	0	2	2.00
95	GCA_030540905.1	Lacticaseibacillus paracasei	11w	SAMN36403201	2022-01-26	Lithuania: Vilnius	-	613	0	0	2	2.00
96	GCA_003712835.1	Lacticaseibacillus paracasei	FAM8407	SAMN04088897	-	Switzerland	-	617	0	0	2	2.00
97	GCA_018917305.1	Lacticaseibacillus paracasei	N53	SAMN19374054	2019-08	China: Suzhou	Macaca fascicularis	618	0	0	2	2.00
98	GCA_039615415.1	Lacticaseibacillus paracasei	TBM 27	SAMN41068605	2015-10	Viet Nam: Bac Giang	-	620	0	0	2	2.00
99	GCA_000410255.1	Lacticaseibacillus paracasei subsp. paracasei Lpp7	Lpp7	SAMN02469713	1982	-	-	621	0	1	3	3.16
100	GCA_000410375.1	Lacticaseibacillus paracasei subsp. paracasei Lpp71	Lpp71	SAMN02469712	1999	-	-	621	0	0	1	1.00